Literature DB >> 27571574

Automated detection of protein unfolding events in atomic force microscopy force curves.

Xavier García-Massó1, Matthias C Huber2,3, Jacqueline Friedmann4, Luis M Gonzalez5, Stefan M Schiller2,3, José L Toca-Herrera6.   

Abstract

Atomic force microscopy is not only a high-resolution imaging device but also a mechanical machine, which can be used either to indent or stretch (soft) biomaterials. Due to the statistical nature of such materials (i.e., hydrogels or polymers) hundreds of force-distance curves are required to describe their mechanical properties. In this manuscript, we present an automated system for polymer unfolding detection based on continuous wavelet analysis. We have tested the automated program on elastin, which is an important protein that provides elasticity to tissues and organs. Our results show that elastin changes its mechanical behavior in the presence of electrolytes. In particular, we show that NaCl has a different effect on the contour length than CaCl2 for similar unfolding forces. In addition, we provide the program in the supporting information for the researches facing such kind of problem.
© 2016 Wiley Periodicals, Inc.

Entities:  

Keywords:  adhesion; atomic force microscopy; detection program; elastin; unfolding

Mesh:

Substances:

Year:  2016        PMID: 27571574     DOI: 10.1002/jemt.22764

Source DB:  PubMed          Journal:  Microsc Res Tech        ISSN: 1059-910X            Impact factor:   2.769


  2 in total

1.  FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm.

Authors:  Patrick R Heenan; Thomas T Perkins
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

2.  Reliability of a new analysis to compute time to stabilization following a single leg drop jump landing in children.

Authors:  Xavier García-Massó; Jiri Skypala; Daniel Jandacka; Isaac Estevan
Journal:  PLoS One       Date:  2019-02-12       Impact factor: 3.240

  2 in total

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