Literature DB >> 27562506

A code within a code: how codons influence mRNA stability.

Javier Martinez1, Bojan Zagrovic2.   

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Year:  2016        PMID： 27562506      PMCID： PMC5048350          DOI： 10.15252/embj.201695283

Source DB:  PubMed          Journal:  EMBO J        ISSN： 0261-4189            Impact factor:   11.598


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  12 in total

1.  Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila.

Authors:  Natascha Bushati; Alexander Stark; Julius Brennecke; Stephen M Cohen
Journal:  Curr Biol       Date:  2008-04-08       Impact factor: 10.834

2.  Deadenylation of maternal mRNAs mediated by miR-427 in Xenopus laevis embryos.

Authors:  Elsebet Lund; Mingzhu Liu; Rebecca S Hartley; Michael D Sheets; James E Dahlberg
Journal:  RNA       Date:  2009-10-23       Impact factor: 4.942

3.  Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Authors:  Ariel A Bazzini; Florencia Del Viso; Miguel A Moreno-Mateos; Timothy G Johnstone; Charles E Vejnar; Yidan Qin; Jun Yao; Mustafa K Khokha; Antonio J Giraldez
Journal:  EMBO J       Date:  2016-07-19       Impact factor: 11.598

4.  Codon optimality is a major determinant of mRNA stability.

Authors:  Vladimir Presnyak; Najwa Alhusaini; Ying-Hsin Chen; Sophie Martin; Nathan Morris; Nicholas Kline; Sara Olson; David Weinberg; Kristian E Baker; Brenton R Graveley; Jeff Coller
Journal:  Cell       Date:  2015-03-12       Impact factor: 41.582

5.  Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs.

Authors:  Antonio J Giraldez; Yuichiro Mishima; Jason Rihel; Russell J Grocock; Stijn Van Dongen; Kunio Inoue; Anton J Enright; Alexander F Schier
Journal:  Science       Date:  2006-02-16       Impact factor: 47.728

6.  Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.

Authors:  Yuichiro Mishima; Yukihide Tomari
Journal:  Mol Cell       Date:  2016-03-17       Impact factor: 17.970

7.  Codon influence on protein expression in E. coli correlates with mRNA levels.

Authors:  Reka Letso; Helen Neely; W Nicholson Price; Grégory Boël; Kam-Ho Wong; Min Su; Jon Luff; Mayank Valecha; John K Everett; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Daniel P Aalberts; John F Hunt
Journal:  Nature       Date:  2016-01-13       Impact factor: 49.962

8.  Analogue encoding of physicochemical properties of proteins in their cognate messenger RNAs.

Authors:  Anton A Polyansky; Mario Hlevnjak; Bojan Zagrovic
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding.

Authors:  Sebastian Pechmann; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2012-12-23       Impact factor: 15.369

10.  Proteome-wide analysis reveals clues of complementary interactions between mRNAs and their cognate proteins as the physicochemical foundation of the genetic code.

Authors:  Anton A Polyansky; Mario Hlevnjak; Bojan Zagrovic
Journal:  RNA Biol       Date:  2013-08-05       Impact factor: 4.652
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