| Literature DB >> 27555957 |
Aaron B Davis1, Frank R Fronczek2, Karl J Wallace1.
Abstract
The structure of the title coordination complex, [Zn(C14H14NO4)2(H2O)2]·2C2H6OS, shows that the Zn(II) cation adopts an octa-hedral geometry and lies on an inversion center. Two organic ligands occupy the equatorial positions of the coordination sphere, forming a chelate ring motif via the O atom on the formyl group and another O atom of the carbonyl group (a pseudo-β-diketone motif). Two water mol-ecules occupy the remaining coordination sites of the Zn(II) cation in the axial positions. The water mol-ecules are each hydrogen bonded to a single dimethyl sulfoxide mol-ecule that has been entrapped in the crystal lattice.Entities:
Keywords: DMSO solvate; coumarin ligands; crystal structure; hydrogen bonding; zinc complex
Year: 2016 PMID: 27555957 PMCID: PMC4992932 DOI: 10.1107/S2056989016009853
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing displacement ellipsoids at the 50% probability level, with a single DMSO molecule hydrogen bonded to a water molecule coordinating to the zinc cation.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O5—H52⋯O6 | 0.83 (1) | 1.98 (1) | 2.8030 (11) | 171 (2) |
| O5—H51⋯O4i | 0.83 (1) | 1.99 (1) | 2.8126 (9) | 169 (1) |
| C12—H12 | 0.98 | 2.62 | 3.5805 (12) | 167 |
| C13—H13 | 0.98 | 2.52 | 3.4050 (13) | 151 |
| C13—H13 | 0.98 | 2.29 | 3.1299 (14) | 143 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The crystal packing of the title compound highlighting the extensive hydrogen-bond network. The left side is the view down [100] and the right view highlights the five unique hydrogen-bonding interactions and three (8) systems.
Figure 3Side view of the crystal packing showing both the unit cell and the π–π stacking (3.734 Å). DMSO molecules have been removed for clarity.
Figure 4Side view of the crystal packing showing the π–π stacking of the coumarin of adjacent coordination complexes, emphasizing the zigzag motif.
Figure 5Chemical structures used in the CSD similarity search.
Experimental details
| Crystal data | |
| Chemical formula | [Zn(C14H14NO4)2(H2O)2]·2C2H6OS |
|
| 778.18 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 90 |
|
| 5.2704 (2), 20.2885 (8), 16.0314 (8) |
| β (°) | 94.210 (2) |
|
| 1709.59 (13) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.91 |
| Crystal size (mm) | 0.42 × 0.13 × 0.06 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD DUO |
| Absorption correction | Multi-scan ( |
|
| 0.839, 0.948 |
| No. of measured, independent and observed [ | 52833, 7923, 6800 |
|
| 0.034 |
| (sin θ/λ)max (Å−1) | 0.821 |
| Refinement | |
|
| 0.029, 0.074, 1.05 |
| No. of reflections | 7923 |
| No. of parameters | 233 |
| No. of restraints | 2 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.64, −0.29 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS97 (Sheldrick, 2008 ▸) and SHELXL2014 (Sheldrick, 2015 ▸).
| [Zn(C14H14NO4)2(H2O)2]·2C2H6OS | |
| Monoclinic, | Mo |
| Cell parameters from 9942 reflections | |
| θ = 2.7–35.6° | |
| µ = 0.91 mm−1 | |
| β = 94.210 (2)° | |
| Needle, colorless | |
| 0.42 × 0.13 × 0.06 mm |
| Bruker Kappa APEXII CCD DUO diffractometer | 7923 independent reflections |
| Radiation source: fine-focus sealed tube | 6800 reflections with |
| TRIUMPH curved graphite monochromator | |
| φ and ω scans | θmax = 35.7°, θmin = 1.6° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | |
| 52833 measured reflections |
| Refinement on | 2 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 7923 reflections | Δρmax = 0.64 e Å−3 |
| 233 parameters | Δρmin = −0.29 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Zn1 | 1.0000 | 0.5000 | 0.5000 | 0.00796 (3) | |
| O1 | 0.76292 (12) | 0.75420 (3) | 0.39084 (4) | 0.01077 (11) | |
| O2 | 1.07150 (13) | 0.72578 (3) | 0.31308 (4) | 0.01409 (12) | |
| O3 | 0.84598 (12) | 0.58615 (3) | 0.53466 (4) | 0.00965 (10) | |
| O4 | 1.23910 (12) | 0.55264 (3) | 0.42845 (4) | 0.01070 (11) | |
| O5 | 0.71499 (13) | 0.49969 (3) | 0.39585 (4) | 0.01339 (12) | |
| H51 | 0.5673 (19) | 0.5100 (7) | 0.4057 (10) | 0.020* | |
| H52 | 0.697 (3) | 0.4765 (7) | 0.3534 (7) | 0.020* | |
| N1 | 0.08901 (14) | 0.83166 (4) | 0.54592 (5) | 0.01113 (12) | |
| C2 | 0.95013 (16) | 0.71005 (4) | 0.37136 (5) | 0.00949 (13) | |
| C3 | 0.97983 (15) | 0.64990 (4) | 0.42057 (5) | 0.00849 (12) | |
| C4 | 0.82637 (15) | 0.63719 (4) | 0.48897 (5) | 0.00782 (12) | |
| C4A | 0.64144 (15) | 0.68716 (4) | 0.50673 (5) | 0.00800 (12) | |
| C5 | 0.48155 (16) | 0.68183 (4) | 0.57310 (5) | 0.00925 (13) | |
| H5 | 0.4947 | 0.6441 | 0.6082 | 0.011* | |
| C6 | 0.30707 (16) | 0.72985 (4) | 0.58833 (5) | 0.01032 (13) | |
| H6 | 0.2068 | 0.7257 | 0.6349 | 0.012* | |
| C7 | 0.27487 (16) | 0.78592 (4) | 0.53494 (5) | 0.00915 (13) | |
| C8 | 0.43691 (16) | 0.79177 (4) | 0.46922 (5) | 0.00975 (13) | |
| H8 | 0.4241 | 0.8291 | 0.4335 | 0.012* | |
| C8A | 0.61446 (16) | 0.74331 (4) | 0.45661 (5) | 0.00859 (12) | |
| C9 | 1.18006 (16) | 0.60867 (4) | 0.39914 (5) | 0.00982 (13) | |
| H9 | 1.2830 | 0.6251 | 0.3576 | 0.012* | |
| C10 | −0.05833 (17) | 0.83018 (5) | 0.61973 (6) | 0.01397 (15) | |
| H10A | −0.1134 | 0.7843 | 0.6292 | 0.017* | |
| H10B | −0.2132 | 0.8573 | 0.6086 | 0.017* | |
| C11 | 0.0875 (2) | 0.85532 (6) | 0.69888 (6) | 0.0237 (2) | |
| H11A | 0.2527 | 0.8331 | 0.7061 | 0.036* | |
| H11B | −0.0103 | 0.8461 | 0.7473 | 0.036* | |
| H11C | 0.1138 | 0.9030 | 0.6943 | 0.036* | |
| C10' | 0.05448 (17) | 0.88743 (4) | 0.48901 (6) | 0.01302 (14) | |
| H10C | −0.1202 | 0.9048 | 0.4918 | 0.016* | |
| H10D | 0.0711 | 0.8718 | 0.4312 | 0.016* | |
| C11' | 0.24407 (19) | 0.94345 (5) | 0.50790 (7) | 0.01896 (18) | |
| H11D | 0.2154 | 0.9628 | 0.5624 | 0.028* | |
| H11E | 0.2204 | 0.9773 | 0.4644 | 0.028* | |
| H11F | 0.4179 | 0.9261 | 0.5089 | 0.028* | |
| S1 | 0.92308 (4) | 0.42229 (2) | 0.19940 (2) | 0.01629 (5) | |
| O6 | 0.68156 (15) | 0.43188 (5) | 0.24310 (6) | 0.0304 (2) | |
| C12 | 1.0926 (2) | 0.35719 (6) | 0.25330 (6) | 0.02078 (19) | |
| H12A | 1.0056 | 0.3153 | 0.2408 | 0.031* | |
| H12B | 1.0995 | 0.3654 | 0.3137 | 0.031* | |
| H12C | 1.2659 | 0.3551 | 0.2351 | 0.031* | |
| C13 | 1.1280 (2) | 0.48866 (6) | 0.23282 (8) | 0.0241 (2) | |
| H13A | 1.1447 | 0.4902 | 0.2941 | 0.036* | |
| H13B | 1.0559 | 0.5303 | 0.2110 | 0.036* | |
| H13C | 1.2959 | 0.4819 | 0.2117 | 0.036* |
| Zn1 | 0.00668 (6) | 0.00682 (6) | 0.01065 (6) | 0.00185 (4) | 0.00248 (4) | −0.00008 (4) |
| O1 | 0.0130 (3) | 0.0096 (3) | 0.0103 (2) | 0.0026 (2) | 0.0048 (2) | 0.00221 (19) |
| O2 | 0.0158 (3) | 0.0148 (3) | 0.0124 (3) | 0.0006 (2) | 0.0065 (2) | 0.0027 (2) |
| O3 | 0.0115 (3) | 0.0071 (2) | 0.0107 (2) | 0.0026 (2) | 0.00331 (19) | 0.00131 (18) |
| O4 | 0.0085 (2) | 0.0094 (2) | 0.0147 (3) | 0.0012 (2) | 0.0038 (2) | −0.0001 (2) |
| O5 | 0.0082 (3) | 0.0180 (3) | 0.0140 (3) | 0.0031 (2) | 0.0009 (2) | −0.0041 (2) |
| N1 | 0.0107 (3) | 0.0101 (3) | 0.0127 (3) | 0.0043 (2) | 0.0020 (2) | 0.0003 (2) |
| C2 | 0.0098 (3) | 0.0096 (3) | 0.0092 (3) | 0.0001 (3) | 0.0018 (2) | −0.0003 (2) |
| C3 | 0.0086 (3) | 0.0084 (3) | 0.0088 (3) | 0.0007 (2) | 0.0028 (2) | 0.0002 (2) |
| C4 | 0.0074 (3) | 0.0077 (3) | 0.0084 (3) | 0.0004 (2) | 0.0008 (2) | −0.0006 (2) |
| C4A | 0.0079 (3) | 0.0073 (3) | 0.0090 (3) | 0.0012 (2) | 0.0020 (2) | 0.0001 (2) |
| C5 | 0.0094 (3) | 0.0088 (3) | 0.0097 (3) | 0.0015 (2) | 0.0024 (2) | 0.0014 (2) |
| C6 | 0.0105 (3) | 0.0095 (3) | 0.0113 (3) | 0.0024 (3) | 0.0031 (3) | 0.0013 (2) |
| C7 | 0.0088 (3) | 0.0081 (3) | 0.0105 (3) | 0.0017 (2) | 0.0006 (2) | −0.0009 (2) |
| C8 | 0.0110 (3) | 0.0077 (3) | 0.0107 (3) | 0.0023 (3) | 0.0017 (2) | 0.0010 (2) |
| C8A | 0.0094 (3) | 0.0079 (3) | 0.0086 (3) | 0.0005 (2) | 0.0019 (2) | 0.0005 (2) |
| C9 | 0.0086 (3) | 0.0102 (3) | 0.0110 (3) | −0.0003 (3) | 0.0031 (2) | −0.0008 (2) |
| C10 | 0.0112 (3) | 0.0149 (4) | 0.0163 (4) | 0.0037 (3) | 0.0041 (3) | −0.0010 (3) |
| C11 | 0.0239 (5) | 0.0321 (6) | 0.0155 (4) | 0.0050 (4) | 0.0034 (3) | −0.0067 (4) |
| C10' | 0.0106 (3) | 0.0103 (3) | 0.0180 (4) | 0.0031 (3) | 0.0001 (3) | 0.0014 (3) |
| C11' | 0.0153 (4) | 0.0106 (4) | 0.0312 (5) | 0.0008 (3) | 0.0028 (4) | −0.0005 (3) |
| S1 | 0.00995 (9) | 0.02305 (11) | 0.01552 (9) | 0.00354 (8) | −0.00148 (7) | −0.00841 (8) |
| O6 | 0.0089 (3) | 0.0480 (5) | 0.0346 (4) | 0.0016 (3) | 0.0025 (3) | −0.0249 (4) |
| C12 | 0.0204 (4) | 0.0264 (5) | 0.0155 (4) | 0.0024 (4) | 0.0017 (3) | 0.0002 (3) |
| C13 | 0.0160 (4) | 0.0238 (5) | 0.0319 (5) | 0.0009 (4) | −0.0015 (4) | −0.0105 (4) |
| Zn1—O3i | 2.0221 (6) | C7—C8 | 1.4090 (11) |
| Zn1—O3 | 2.0221 (6) | C8—C8A | 1.3823 (11) |
| Zn1—O4 | 2.0631 (6) | C8—H8 | 0.9500 |
| Zn1—O4i | 2.0632 (6) | C9—H9 | 0.9500 |
| Zn1—O5 | 2.1624 (7) | C10—C11 | 1.5224 (14) |
| Zn1—O5i | 2.1624 (7) | C10—H10A | 0.9900 |
| O1—C8A | 1.3762 (10) | C10—H10B | 0.9900 |
| O1—C2 | 1.3852 (10) | C11—H11A | 0.9800 |
| O2—C2 | 1.2132 (10) | C11—H11B | 0.9800 |
| O3—C4 | 1.2683 (10) | C11—H11C | 0.9800 |
| O4—C9 | 1.2603 (10) | C10'—C11' | 1.5289 (14) |
| O5—H51 | 0.832 (9) | C10'—H10C | 0.9900 |
| O5—H52 | 0.827 (9) | C10'—H10D | 0.9900 |
| N1—C7 | 1.3700 (11) | C11'—H11D | 0.9800 |
| N1—C10' | 1.4565 (11) | C11'—H11E | 0.9800 |
| N1—C10 | 1.4624 (12) | C11'—H11F | 0.9800 |
| C2—C3 | 1.4552 (11) | S1—O6 | 1.5100 (8) |
| C3—C9 | 1.4088 (11) | S1—C12 | 1.7822 (11) |
| C3—C4 | 1.4330 (11) | S1—C13 | 1.7836 (11) |
| C4—C4A | 1.4490 (11) | C12—H12A | 0.9800 |
| C4A—C8A | 1.3953 (11) | C12—H12B | 0.9800 |
| C4A—C5 | 1.4091 (11) | C12—H12C | 0.9800 |
| C5—C6 | 1.3739 (11) | C13—H13A | 0.9800 |
| C5—H5 | 0.9500 | C13—H13B | 0.9800 |
| C6—C7 | 1.4263 (12) | C13—H13C | 0.9800 |
| C6—H6 | 0.9500 | ||
| O3i—Zn1—O3 | 180.00 (3) | C7—C8—H8 | 119.9 |
| O3i—Zn1—O4 | 91.19 (2) | O1—C8A—C8 | 115.27 (7) |
| O3—Zn1—O4 | 88.81 (2) | O1—C8A—C4A | 122.18 (7) |
| O3i—Zn1—O4i | 88.81 (2) | C8—C8A—C4A | 122.55 (7) |
| O3—Zn1—O4i | 91.19 (2) | O4—C9—C3 | 127.84 (8) |
| O4—Zn1—O4i | 180.0 | O4—C9—H9 | 116.1 |
| O3i—Zn1—O5 | 93.18 (3) | C3—C9—H9 | 116.1 |
| O3—Zn1—O5 | 86.82 (3) | N1—C10—C11 | 113.70 (8) |
| O4—Zn1—O5 | 89.44 (3) | N1—C10—H10A | 108.8 |
| O4i—Zn1—O5 | 90.56 (3) | C11—C10—H10A | 108.8 |
| O3i—Zn1—O5i | 86.83 (3) | N1—C10—H10B | 108.8 |
| O3—Zn1—O5i | 93.17 (3) | C11—C10—H10B | 108.8 |
| O4—Zn1—O5i | 90.56 (3) | H10A—C10—H10B | 107.7 |
| O4i—Zn1—O5i | 89.44 (3) | C10—C11—H11A | 109.5 |
| O5—Zn1—O5i | 180.00 (4) | C10—C11—H11B | 109.5 |
| C8A—O1—C2 | 121.56 (6) | H11A—C11—H11B | 109.5 |
| C4—O3—Zn1 | 124.36 (5) | C10—C11—H11C | 109.5 |
| C9—O4—Zn1 | 122.01 (5) | H11A—C11—H11C | 109.5 |
| Zn1—O5—H51 | 117.4 (11) | H11B—C11—H11C | 109.5 |
| Zn1—O5—H52 | 131.9 (11) | N1—C10'—C11' | 113.80 (8) |
| H51—O5—H52 | 104.3 (15) | N1—C10'—H10C | 108.8 |
| C7—N1—C10' | 120.21 (7) | C11'—C10'—H10C | 108.8 |
| C7—N1—C10 | 121.15 (7) | N1—C10'—H10D | 108.8 |
| C10'—N1—C10 | 118.26 (7) | C11'—C10'—H10D | 108.8 |
| O2—C2—O1 | 115.34 (7) | H10C—C10'—H10D | 107.7 |
| O2—C2—C3 | 126.61 (8) | C10'—C11'—H11D | 109.5 |
| O1—C2—C3 | 118.04 (7) | C10'—C11'—H11E | 109.5 |
| C9—C3—C4 | 123.69 (7) | H11D—C11'—H11E | 109.5 |
| C9—C3—C2 | 114.74 (7) | C10'—C11'—H11F | 109.5 |
| C4—C3—C2 | 121.43 (7) | H11D—C11'—H11F | 109.5 |
| O3—C4—C3 | 124.22 (7) | H11E—C11'—H11F | 109.5 |
| O3—C4—C4A | 119.03 (7) | O6—S1—C12 | 106.27 (6) |
| C3—C4—C4A | 116.75 (7) | O6—S1—C13 | 106.01 (5) |
| C8A—C4A—C5 | 117.14 (7) | C12—S1—C13 | 98.22 (6) |
| C8A—C4A—C4 | 119.98 (7) | S1—C12—H12A | 109.5 |
| C5—C4A—C4 | 122.88 (7) | S1—C12—H12B | 109.5 |
| C6—C5—C4A | 121.67 (7) | H12A—C12—H12B | 109.5 |
| C6—C5—H5 | 119.2 | S1—C12—H12C | 109.5 |
| C4A—C5—H5 | 119.2 | H12A—C12—H12C | 109.5 |
| C5—C6—C7 | 120.71 (7) | H12B—C12—H12C | 109.5 |
| C5—C6—H6 | 119.6 | S1—C13—H13A | 109.5 |
| C7—C6—H6 | 119.6 | S1—C13—H13B | 109.5 |
| N1—C7—C8 | 121.16 (7) | H13A—C13—H13B | 109.5 |
| N1—C7—C6 | 121.18 (7) | S1—C13—H13C | 109.5 |
| C8—C7—C6 | 117.64 (7) | H13A—C13—H13C | 109.5 |
| C8A—C8—C7 | 120.23 (7) | H13B—C13—H13C | 109.5 |
| C8A—C8—H8 | 119.9 | ||
| C8A—O1—C2—O2 | −178.59 (8) | C10'—N1—C7—C6 | −178.06 (8) |
| C8A—O1—C2—C3 | 2.40 (11) | C10—N1—C7—C6 | 9.15 (12) |
| O2—C2—C3—C9 | 3.39 (13) | C5—C6—C7—N1 | 175.22 (8) |
| O1—C2—C3—C9 | −177.73 (7) | C5—C6—C7—C8 | −3.26 (12) |
| O2—C2—C3—C4 | 179.19 (8) | N1—C7—C8—C8A | −176.64 (8) |
| O1—C2—C3—C4 | −1.93 (11) | C6—C7—C8—C8A | 1.84 (12) |
| Zn1—O3—C4—C3 | −22.08 (11) | C2—O1—C8A—C8 | 179.44 (7) |
| Zn1—O3—C4—C4A | 159.09 (6) | C2—O1—C8A—C4A | −0.73 (12) |
| C9—C3—C4—O3 | −3.62 (13) | C7—C8—C8A—O1 | −179.82 (7) |
| C2—C3—C4—O3 | −179.04 (8) | C7—C8—C8A—C4A | 0.35 (13) |
| C9—C3—C4—C4A | 175.24 (7) | C5—C4A—C8A—O1 | 179.02 (7) |
| C2—C3—C4—C4A | −0.18 (11) | C4—C4A—C8A—O1 | −1.52 (12) |
| O3—C4—C4A—C8A | −179.20 (7) | C5—C4A—C8A—C8 | −1.16 (12) |
| C3—C4—C4A—C8A | 1.88 (11) | C4—C4A—C8A—C8 | 178.30 (8) |
| O3—C4—C4A—C5 | 0.24 (12) | Zn1—O4—C9—C3 | 13.02 (12) |
| C3—C4—C4A—C5 | −178.68 (7) | C4—C3—C9—O4 | 8.25 (14) |
| C8A—C4A—C5—C6 | −0.29 (12) | C2—C3—C9—O4 | −176.05 (8) |
| C4—C4A—C5—C6 | −179.74 (8) | C7—N1—C10—C11 | 75.54 (11) |
| C4A—C5—C6—C7 | 2.53 (13) | C10'—N1—C10—C11 | −97.39 (10) |
| C10'—N1—C7—C8 | 0.37 (12) | C7—N1—C10'—C11' | −80.01 (10) |
| C10—N1—C7—C8 | −172.43 (8) | C10—N1—C10'—C11' | 92.99 (10) |
| H··· | ||||
| O5—H52···O6 | 0.83 (1) | 1.98 (1) | 2.8030 (11) | 171 (2) |
| O5—H51···O4ii | 0.83 (1) | 1.99 (1) | 2.8126 (9) | 169 (1) |
| C12—H12 | 0.98 | 2.62 | 3.5805 (12) | 167 |
| C13—H13 | 0.98 | 2.52 | 3.4050 (13) | 151 |
| C13—H13 | 0.98 | 2.29 | 3.1299 (14) | 143 |