Literature DB >> 27555927

Crystallographic and spectroscopic characterization of (R)-O-acetyl-mandelic acid.

Cady Cirbes1, Joseph M Tanski1.   

Abstract

The title compound [systematic name: (R)-(-)-2-acet-oxy-2-phenyl-acetic acid], C10H10O4, is a resolved chiral ester derivative of mandelic acid. The compound contains an acetate group and a carb-oxy-lic acid group, which engage in inter-molecular hydrogen bonding, forming chains extending parallel to [001] with a short donor-acceptor hydrogen-bonding distance of 2.676 (2) Å.

Entities:  

Keywords:  absolute structure; crystal structure; hydrogen bonding; mandelic acid ester derivative

Year:  2016        PMID: 27555927      PMCID: PMC4992902          DOI: 10.1107/S2056989016008653

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Chiral, resolved carb­oxy­lic acids have played an important role as chiral NMR shift reagents (Lovely & Wenzel, 2008 ▸; Parker, 1991 ▸). The title compound, (R)-(−)-2-acet­oxy-2-phenyl­acetic acid (I), commonly known as (R)-O-acetyl­mandelic acid, is a chiral, resolved derivative of mandelic acid. The compound may be synthesized by acetyl­ation of the parent α-hy­droxy acid with acetic anhydride in pyridine (Ornelas et al., 2013 ▸). When racemic, resolution of the compound with free amino acids has been demonstrated (Szeleczky et al., 2015 ▸). The title compound has been employed as a chiral NMR shift reagent (Parker, 1991 ▸).

Structural commentary

The mol­ecular structure of the title compound (Fig. 1 ▸) shows the R confguration about carbon atom C1, and that the mol­ecule does not engage in intra­molecular or pairwise hydrogen bonding. The absolute structure parameters confirm the R assignment, with Flack x = −0.01 (4) and Hooft y = −0.02 (4), calculated with PLATON (Spek, 2009 ▸).
Figure 1

A view of (R)-(−)-2-acet­oxy-2-phenyl­acetic acid (I) with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level.

Supra­molecular features

The mol­ecules pack together in the solid state via van der Waals forces and hydrogen bonding between the carb­oxy­lic acid OH group and the carbonyl oxygen atom of the ester on a neighboring mol­ecule, O1—H1⋯O4i [symmetry code (i) −x + , −y + 1, z − ] with a donor–acceptor distance of 2.676 (2) Å (Table 1 ▸). These inter­actions create zigzag hydrogen-bonded chains that extend parallel to the c axis of the unit cell (Fig. 2 ▸). Notably, there is no face-to-face or edge-to-face π-stacking.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O4i 0.85 (2)1.84 (2)2.6761 (16)165 (2)

Symmetry code: (i) .

Figure 2

A view of the inter­molecular hydrogen bonding in (R)-(−)-2-acet­oxy-2-phenyl­acetic acid (I) that forms a one-dimensional chain. Symmetry code: (i) −x + , −y + 1, z − .

Database survey

The Cambridge Structural Database (Groom et al., 2016 ▸) contains several related mandelic acid ester structures. Related structures of resolved mandelic acid esters that differ by the nature of the ester group include (2S)-[(2S)-2-hy­droxy-2-phenyl­ethano­yloxy]phenyl­acetic acid (Mughal et al., 2004 ▸) and (1R,2R,3S,4S)-2-[(R)-mandeloxycarbon­yl]bi­cyclo­(2.2.1)heptane-3-carb­oxy­lic acid (Ohtani et al., 1991 ▸). The hydrogen bonding in the former differs from (I), forming an inter­molecular chain with the carb­oxy­lic acid groups further cross-linked by hydrogen bonding of the alcohol moiety with the ester, whereas the latter compound exhibits pairwise dimerization of the carb­oxy­lic acid groups. A related structure with a tert-butyl ester and substituents on the phenyl ring, (S,E)-2-[2-(3-methoxy-3-oxoprop-1-en-1-yl)-4-(trifluoromethyl)phenyl]-2-(pivaloyloxy)acetic acid (Xiao et al., 2016 ▸), exhibits a similar one-dimensional inter­molecular carb­oxy­lic acid OH⋯ester carbonyl hydrogen-bonding motif to that found in the title compound.

Synthesis and crystallization

(R)-(−)-2-acet­oxy-2-phenyl­acetic acid (99%) was purchased from Aldrich Chemical Company, USA, and was used as received.

Analytical data

1H NMR (Bruker Avance 300 MHz, CDCl3): δ 2.19 (s, 3 H, CH), 5.93 (s, 1H, CH), 7.36–7.42 (m, 3 H, Car­yl H), 7.45–7.51 (m, 2H, Car­yl H), 11.76 (br s, 1H, OH). 13C NMR (13C{1H}, 75.5 MHz, CDCl3): δ 20.59 (CH3), 74.02 (CH), 127.62 (C ar­ylH), 128.86 (C ar­ylH), 129.49 (C ar­ylH), 132.98 (C ar­yl), 170.38 (CO), 174.55 (CO). IR (Thermo Nicolet iS50, ATR, cm−1): 3483 (w), 3014 (v br, O—H str), 2708 (w), 2588 (w), 1752 (v s, C=O str), 1686 (v s, C=O str), 1498 (w), 1461 (w), 1412 (m), 1382 (s), 1321 (m), 1277 (s), 1259 (s), 1206 (s), 1182 (s), 1045 (s), 996 (m), 967 (m), 919 (m), 888 (m), 767 (s), 734 (s), 700 (s), 642 (m), 616 (w), 603 (w), 583 (w), 525 (s), 487 (w). GC/MS (Hewlett-Packard MS 5975/GC 7890): M-18+ = 176 (calc. exact mass 194.06 - water = 176).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All non-hydrogen atoms were refined anisotropically. Hydrogen atoms on carbon were included in calculated positions and refined using a riding model with C–H = 0.95, 0.98 and 1.00 Å and U iso(H) = 1.2, 1.5 and 1.2 × U eq(C) of the aryl, methyl and methine C atoms, respectively. The position of the carb­oxy­lic acid hydrogen atom was found in the difference map and the atom refined semi-freely using a distance restraint d(O—H) = 0.84 Å, and U iso(H) = 1.2U eq(O).
Table 2

Experimental details

Crystal data
Chemical formulaC10H10O4
M r 194.18
Crystal system, space groupOrthorhombic, P212121
Temperature (K)125
a, b, c (Å)9.1047 (10), 10.0086 (11), 10.5871 (11)
V3)964.75 (18)
Z 4
Radiation typeCu Kα
μ (mm−1)0.88
Crystal size (mm)0.26 × 0.26 × 0.17
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2013)
T min, T max 0.74, 0.86
No. of measured, independent and observed [I > 2σ(I)] reflections8953, 1698, 1693
R int 0.030
(sin θ/λ)max−1)0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.025, 0.062, 1.10
No. of reflections1698
No. of parameters131
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.19, −0.19
Absolute structureFlack x determined using 691 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013); Hooft y calculated with PLATON (Spek, 2009)
Absolute structure parameter−0.01 (4)

Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), SHELXTL (Sheldrick, 2008 ▸), OLEX2 (Dolomanov et al., 2009 ▸), Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016008653/pk2580sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016008653/pk2580Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989016008653/pk2580Isup3.cml CCDC reference: 1482445 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H10O4Dx = 1.337 Mg m3
Mr = 194.18Cu Kα radiation, λ = 1.54178 Å
Orthorhombic, P212121Cell parameters from 8300 reflections
a = 9.1047 (10) Åθ = 4.2–66.6°
b = 10.0086 (11) ŵ = 0.88 mm1
c = 10.5871 (11) ÅT = 125 K
V = 964.75 (18) Å3Block, colourless
Z = 40.26 × 0.26 × 0.17 mm
F(000) = 408
Bruker APEXII CCD diffractometer1698 independent reflections
Radiation source: Cu IuS micro-focus source1693 reflections with I > 2σ(I)
Detector resolution: 8.3333 pixels mm-1Rint = 0.030
φ and ω scansθmax = 66.6°, θmin = 6.1°
Absorption correction: multi-scan (SADABS; Bruker, 2013)h = −10→10
Tmin = 0.74, Tmax = 0.86k = −11→11
8953 measured reflectionsl = −12→12
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.025w = 1/[σ2(Fo2) + (0.0336P)2 + 0.1385P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.062(Δ/σ)max < 0.001
S = 1.10Δρmax = 0.19 e Å3
1698 reflectionsΔρmin = −0.19 e Å3
131 parametersAbsolute structure: Flack x determined using 691 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013); Hooft y calculated with PLATON (Spek, 2009)
1 restraintAbsolute structure parameter: −0.01 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.42132 (13)0.46237 (13)0.08956 (12)0.0329 (3)
H10.355 (2)0.479 (2)0.035 (2)0.039*
O20.35211 (12)0.66275 (12)0.16115 (11)0.0286 (3)
O30.50941 (12)0.63319 (11)0.37499 (9)0.0235 (3)
O40.29716 (12)0.53107 (12)0.42058 (10)0.0273 (3)
C10.53382 (16)0.53625 (15)0.27588 (13)0.0200 (3)
H1A0.51990.44380.30970.024*
C20.69072 (15)0.55447 (14)0.23211 (13)0.0184 (3)
C30.79939 (18)0.47071 (16)0.27844 (16)0.0272 (4)
H3A0.77440.39880.33290.033*
C40.94513 (18)0.49242 (17)0.2450 (2)0.0346 (4)
H4A1.01980.43580.27760.042*
C50.98206 (18)0.59621 (18)0.16417 (17)0.0326 (4)
H5A1.08180.61090.14180.039*
C60.87356 (18)0.67809 (18)0.11641 (16)0.0303 (4)
H6A0.89850.74820.05990.036*
C70.72770 (17)0.65833 (17)0.15078 (14)0.0242 (3)
H7A0.65340.71570.11870.029*
C80.42388 (15)0.56275 (15)0.16993 (14)0.0201 (3)
C90.38220 (17)0.62321 (16)0.43773 (14)0.0237 (3)
C100.3600 (2)0.7365 (2)0.52655 (17)0.0364 (4)
H10A0.45230.75550.57070.055*
H10B0.28420.71280.58830.055*
H10C0.3290.81580.47920.055*
U11U22U33U12U13U23
O10.0273 (6)0.0350 (6)0.0363 (6)0.0053 (5)−0.0144 (5)−0.0139 (5)
O20.0270 (6)0.0289 (6)0.0298 (6)0.0060 (5)−0.0008 (5)−0.0001 (5)
O30.0209 (5)0.0298 (6)0.0198 (5)−0.0061 (4)0.0051 (4)−0.0055 (4)
O40.0232 (5)0.0335 (6)0.0253 (6)−0.0066 (5)0.0058 (4)0.0003 (5)
C10.0197 (7)0.0209 (7)0.0193 (7)−0.0032 (6)0.0012 (6)−0.0020 (6)
C20.0171 (7)0.0207 (7)0.0173 (7)−0.0019 (6)−0.0001 (5)−0.0046 (6)
C30.0249 (8)0.0232 (8)0.0334 (8)0.0001 (7)−0.0030 (7)0.0014 (7)
C40.0214 (7)0.0329 (9)0.0496 (11)0.0066 (7)−0.0035 (8)−0.0042 (8)
C50.0184 (7)0.0424 (9)0.0370 (9)−0.0037 (7)0.0061 (7)−0.0119 (8)
C60.0276 (8)0.0394 (9)0.0238 (8)−0.0093 (8)0.0042 (7)0.0016 (7)
C70.0215 (7)0.0301 (8)0.0210 (7)−0.0005 (6)−0.0010 (6)0.0037 (6)
C80.0149 (7)0.0237 (7)0.0216 (7)−0.0034 (6)0.0036 (5)−0.0010 (6)
C90.0213 (7)0.0315 (8)0.0184 (7)−0.0036 (7)0.0033 (6)0.0021 (6)
C100.0390 (10)0.0389 (10)0.0311 (9)−0.0082 (9)0.0139 (8)−0.0076 (8)
O1—C81.3168 (19)C3—H3A0.95
O1—H10.852 (19)C4—C51.387 (3)
O2—C81.1989 (19)C4—H4A0.95
O3—C91.3389 (18)C5—C61.380 (3)
O3—C11.4463 (17)C5—H5A0.95
O4—C91.218 (2)C6—C71.391 (2)
C1—C21.5128 (19)C6—H6A0.95
C1—C81.527 (2)C7—H7A0.95
C1—H1A1.0C9—C101.487 (2)
C2—C31.386 (2)C10—H10A0.98
C2—C71.391 (2)C10—H10B0.98
C3—C41.391 (2)C10—H10C0.98
C8—O1—H1107.2 (15)C4—C5—H5A120.1
C9—O3—C1116.28 (11)C5—C6—C7120.22 (16)
O3—C1—C2106.65 (11)C5—C6—H6A119.9
O3—C1—C8108.41 (11)C7—C6—H6A119.9
C2—C1—C8111.91 (12)C6—C7—C2119.95 (14)
O3—C1—H1A109.9C6—C7—H7A120.0
C2—C1—H1A109.9C2—C7—H7A120.0
C8—C1—H1A109.9O2—C8—O1125.26 (14)
C3—C2—C7119.87 (14)O2—C8—C1124.01 (14)
C3—C2—C1119.51 (13)O1—C8—C1110.72 (12)
C7—C2—C1120.54 (13)O4—C9—O3122.18 (14)
C2—C3—C4119.76 (15)O4—C9—C10125.84 (14)
C2—C3—H3A120.1O3—C9—C10111.98 (13)
C4—C3—H3A120.1C9—C10—H10A109.5
C5—C4—C3120.37 (16)C9—C10—H10B109.5
C5—C4—H4A119.8H10A—C10—H10B109.5
C3—C4—H4A119.8C9—C10—H10C109.5
C6—C5—C4119.83 (15)H10A—C10—H10C109.5
C6—C5—H5A120.1H10B—C10—H10C109.5
C9—O3—C1—C2−172.13 (12)C4—C5—C6—C71.1 (3)
C9—O3—C1—C867.21 (15)C5—C6—C7—C2−1.0 (3)
O3—C1—C2—C398.10 (15)C3—C2—C7—C6−0.2 (2)
C8—C1—C2—C3−143.51 (14)C1—C2—C7—C6176.71 (15)
O3—C1—C2—C7−78.78 (16)O3—C1—C8—O213.69 (19)
C8—C1—C2—C739.62 (18)C2—C1—C8—O2−103.65 (16)
C7—C2—C3—C41.1 (2)O3—C1—C8—O1−167.43 (12)
C1—C2—C3—C4−175.84 (16)C2—C1—C8—O175.23 (15)
C2—C3—C4—C5−0.9 (3)C1—O3—C9—O46.3 (2)
C3—C4—C5—C6−0.2 (3)C1—O3—C9—C10−173.19 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.85 (2)1.84 (2)2.6761 (16)165 (2)
C10—H10B···O1ii0.982.563.312 (2)133
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