Literature DB >> 27552079

Liquid-liquid phase separation in cellular signaling systems.

P Andrew Chong1, Julie D Forman-Kay2.   

Abstract

Liquid-liquid demixing or phase separation of protein with RNA is now recognized to be a key part of the mechanism for assembly of ribonucleoprotein granules. Cellular signaling also appears to employ phase separation as a mechanism for amplification or control of signal transduction both within the cytoplasm and at the membrane. The concept of receptor clustering, identified more than 3 decades ago, is now being examined through the lens of phase separation leading to new insights. Intrinsically disordered proteins or regions are central to these processes owing to their flexibility and accessibility for dynamic protein-protein interactions and post-translational modifications. We review some recent examples, examine the mechanisms driving phase separation and delineate the implications for signal transduction systems.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27552079     DOI: 10.1016/j.sbi.2016.08.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  61 in total

1.  Liquid and Hydrogel Phases of PrPC Linked to Conformation Shifts and Triggered by Alzheimer's Amyloid-β Oligomers.

Authors:  Mikhail A Kostylev; Marcus D Tuttle; Suho Lee; Lauren E Klein; Hideyuki Takahashi; Timothy O Cox; Erik C Gunther; Kurt W Zilm; Stephen M Strittmatter
Journal:  Mol Cell       Date:  2018-10-25       Impact factor: 17.970

2.  Phase separation and clustering of an ABC transporter in Mycobacterium tuberculosis.

Authors:  Florian Heinkel; Libin Abraham; Mary Ko; Joseph Chao; Horacio Bach; Lok Tin Hui; Haoran Li; Mang Zhu; Yeou Mei Ling; Jason C Rogalski; Joshua Scurll; Jennifer M Bui; Thibault Mayor; Michael R Gold; Keng C Chou; Yossef Av-Gay; Lawrence P McIntosh; Jörg Gsponer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-31       Impact factor: 11.205

3.  Phase separation of SERRATE drives dicing body assembly and promotes miRNA processing in Arabidopsis.

Authors:  Dongqi Xie; Min Chen; Jinrong Niu; Liang Wang; Yan Li; Xiaofeng Fang; Pilong Li; Yijun Qi
Journal:  Nat Cell Biol       Date:  2020-12-07       Impact factor: 28.824

Review 4.  Friend or foe-Post-translational modifications as regulators of phase separation and RNP granule dynamics.

Authors:  Mario Hofweber; Dorothee Dormann
Journal:  J Biol Chem       Date:  2018-12-26       Impact factor: 5.157

5.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

6.  TAR DNA-binding protein 43 (TDP-43) liquid-liquid phase separation is mediated by just a few aromatic residues.

Authors:  Hao-Ru Li; Wan-Chin Chiang; Po-Chun Chou; Won-Jing Wang; Jie-Rong Huang
Journal:  J Biol Chem       Date:  2018-03-06       Impact factor: 5.157

7.  Conformational Heterogeneity and FRET Data Interpretation for Dimensions of Unfolded Proteins.

Authors:  Jianhui Song; Gregory-Neal Gomes; Tongfei Shi; Claudiu C Gradinaru; Hue Sun Chan
Journal:  Biophys J       Date:  2017-09-05       Impact factor: 4.033

8.  Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

Authors:  Robert McCoy Vernon; Paul Andrew Chong; Brian Tsang; Tae Hun Kim; Alaji Bah; Patrick Farber; Hong Lin; Julie Deborah Forman-Kay
Journal:  Elife       Date:  2018-02-09       Impact factor: 8.140

Review 9.  Principles and Applications of Biological Membrane Organization.

Authors:  Wade F Zeno; Kasey J Day; Vernita D Gordon; Jeanne C Stachowiak
Journal:  Annu Rev Biophys       Date:  2020-01-08       Impact factor: 12.981

10.  Point mutations in the N-terminal domain of transactive response DNA-binding protein 43 kDa (TDP-43) compromise its stability, dimerization, and functions.

Authors:  Miguel Mompeán; Valentina Romano; David Pantoja-Uceda; Cristiana Stuani; Francisco E Baralle; Emanuele Buratti; Douglas V Laurents
Journal:  J Biol Chem       Date:  2017-05-31       Impact factor: 5.157

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