Literature DB >> 27549783

Ultrastructural and molecular characterization of diversity among small araphid diatoms all lacking rimoportulae. I. Five new genera, eight new species.

Chun L Li1, Matt P Ashworth2, Andrzej Witkowski1, Christopher S Lobban3, Izabela Zgłobicka4, Krzysztof J Kurzydłowski4, Song Qin5.   

Abstract

Pennate diatoms are important contributors to primary production in freshwater and marine habitats. But the extent of their diversity, ecology, and evolution is still largely unknown. This is particularly evident among the clades of pennate diatoms without raphe slits, whose diversity is likely underestimated due to their small size and features that can be difficult to discern under light microscopy. In this study, we described five new araphid genera with eight new species based on morphological observations (light and electron microscopy) and molecular data (nuclear-encoded small subunit ribosomal RNA and chloroplast-encoded rbcL and psbC): Serratifera varisterna, Hendeyella rhombica, H. dimeregrammopsis, H. lineata, Psammotaenia lanceolata, Castoridens striata, C. hyalina, and Cratericulifera shandongensis. We also transferred Dimeregramma dubium to Hendeyella dubia. Phylogenetic analysis of the molecular data revealed that all the newly established taxa fell into a monophyletic group, with Fragilariforma virescens located at the base. The group was composed by two subclades: one comprising Castoridens, Cratericulifera, and Plagiostriata, and the larger including also the rest of the new genera plus some of the smallest known diatoms, such as Nanofrustulum, Opephora, Pseudostaurosira, Staurosirella, and Staurosira with a high level of support. This study enhances the general knowledge on the phylogeny and biodiversity of a group of small araphid diatoms that have been generally poorly described both by electron microscopy and DNA sequence data.
© 2016 Phycological Society of America.

Entities:  

Keywords:  Araphid diatoms; Fragilariaceae; SSU rRNA; biodiversity; phylogeny; psbC; rbcL; small-celled diatoms

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Substances:

Year:  2016        PMID: 27549783     DOI: 10.1111/jpy.12460

Source DB:  PubMed          Journal:  J Phycol        ISSN: 0022-3646            Impact factor:   2.923


  3 in total

1.  Visualization of the internal structure of Didymosphenia geminata frustules using nano X-ray tomography.

Authors:  Izabela Zgłobicka; Qiong Li; Jürgen Gluch; Magdalena Płocińska; Teresa Noga; Romuald Dobosz; Robert Szoszkiewicz; Andrzej Witkowski; Ehrenfried Zschech; Krzysztof J Kurzydłowski
Journal:  Sci Rep       Date:  2017-08-22       Impact factor: 4.379

2.  Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.

Authors:  Shinya Sato; Deepak Nanjappa; Richard G Dorrell; Fabio Rocha Jimenez Vieira; Elena Kazamia; Leila Tirichine; Alaguraj Veluchamy; Roland Heilig; Jean-Marc Aury; Olivier Jaillon; Patrick Wincker; Zoltan Fussy; Miroslav Obornik; Sergio A Muñoz-Gómez; David G Mann; Chris Bowler; Adriana Zingone
Journal:  Sci Rep       Date:  2020-06-10       Impact factor: 4.379

3.  Insight into diatom frustule structures using various imaging techniques.

Authors:  Izabela Zgłobicka; Jürgen Gluch; Zhongquan Liao; Stephan Werner; Peter Guttmann; Qiong Li; Piotr Bazarnik; Tomasz Plocinski; Andrzej Witkowski; Krzysztof J Kurzydlowski
Journal:  Sci Rep       Date:  2021-07-15       Impact factor: 4.379

  3 in total

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