| Literature DB >> 27547040 |
Fahda Al-Okaily1, Seham Al-Rashidi1, Maysoon Al-Balawi1, Md Mustafa2, Misbahul Arfin2, Abdulrahman Al-Asmari2.
Abstract
BACKGROUND: HLA-B*51 has been universally associated with Behcet's disease (BD) susceptibility, while different alleles of HLA-A have also been identified as independent BD susceptibility loci in various ethnic populations. The objective of this study was to investigate associations of HLA-A and -B alleles with BD in Saudi patients.Entities:
Keywords: Behcet’s disease; HLA; Saudis; genetics; genotyping
Year: 2016 PMID: 27547040 PMCID: PMC4978194 DOI: 10.4137/CMAMD.S39879
Source DB: PubMed Journal: Clin Med Insights Arthritis Musculoskelet Disord ISSN: 1179-5441
Comparison of allele frequencies of HLA-A in patients with Behcet’s disease and controls.
| BD (60) | CONTROLS (60) | ODDS RATIO | EF/PF | ||
|---|---|---|---|---|---|
| 4 (3.33) | 10 (8.33) | 0.166 | 0.379 (0.115–1.245) | 0.317 | |
| 46 (38.33) | 35 (29.16) | 0.136 | 1.509 (0.880–2.587) | 0.188 | |
| 3 (2.50) | 8 (6.66) | 0.137 | 0.359 (0.092–1.387) | 0.327 | |
| 1 (0.83) | 5 (4.16) | 0.121 | 0.193 (0.022–1.679) | 0.407 | |
| 7 (5.83) | 11 (9.16) | 0.341 | 0.613 (0.229–1.641) | 0.196 | |
| 7 (5.83) | 11 (9.16) | 0.341 | 0.613 (0.229–1.641) | 0.196 | |
| 0 | 1 (0.83) | 0.499 | – | – | |
| 13 (10.83) | 4 (3.33) | 0.041 | 3.523 (1.114–11.139) | 0.546 | |
| 1(0.83) | 3 (2.50) | 0.371 | 0.327 (0.033–3.196) | 0.339 | |
| 4 (3.33) | 11 (9.16) | 0.068 | 0.341 (0.105–1.105) | 0.339 | |
| 13 (10.83) | 2 (1.67) | 0.005 | 7.168 (1.581–32.498) | 0.702 | |
| 4 (3.33) | 4 (3.33) | 1.00 | 1.00 (0.244–4.094) | – | |
| 3 (2.50) | 1 (0.83) | 0.371 | 3.051 (0.312–29.758) | 0.504 | |
| 13 (10.83) | 13 (10.83) | 1.00 | 1.00 (0.443–2.257) | – | |
| 1 (0.83) | 0 | 0.499 | – | – | |
| 0 | 1 (0.83) | 0.499 | – | – |
Notes:
Data for EF.
Statistically significant using Fisher’s exact test.
P = 0.08 Bonferroni corrected.
P = 0.656 Bonferroni corrected.
Abbreviations: N, number of allele; BD, Behcet’s disease; EF, etiological fraction; PF, preventive fraction.
Comparison of allele frequencies of HLA-A in active and nonactive Behcet’s disease.
| ACTIVE (34) | NON ACTIVE (26) | ODDS RATIO | EF/PF | ||
|---|---|---|---|---|---|
| 3 (4.41) | 1 (1.92) | 0.632 | 2.353 (0.237–23.307) | 0.430 | |
| 31 (45.59) | 15 (28.85) | 0.087 | 2.066 (0.960–4.448) | 0.346 | |
| 2 (2.94) | 1 (1.92) | 1.00 | 1.545 (0.136–17.522) | 0.231 | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 4 (5.88) | 3 (5.77) | 1.00 | 1.021 (0.218–4.773) | 0.113 | |
| 3 (4.41) | 4 (7.70) | 0.465 | 0.553 (0.118–2.590) | 0.385 | |
| 9 (13.24) | 4 (7.70) | 0.388 | 1.830 (0.530–6.312) | 0.313 | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 2 (2.94) | 2 (3.85) | 1.00 | 0.757 (0.103–5.565) | 0.114 | |
| 3 (4.41) | 10 (19.23) | 0.015 | 0.193 (0.050–0.745) | 0.489 | |
| 1 (1.47) | 3 (5.77) | 0.312 | 0.243 (0.246–2.414) | 0.437 | |
| 1 (1.47) | 2 (3.85) | 0.578 | 0.373 (0.032–4.231) | 0.355 | |
| 8 (11.76) | 5 (9.61) | 0.774 | 1.253 (0.384–4.082) | 0.068 | |
| 1 (1.47) | 0 | 0.999 | – | – |
Notes:
Data for EF.
Statistically significant using Fisher’s exact test.
Abbreviations: N, number of alleles; EF, etiological fraction; PF, preventive fraction.
Comparison of allele frequencies of HLA-B in patients with Behcet’s disease and controls.
| BD (60) | CONTROLS (60) | ODDS RATIO | EF/PF | ||
|---|---|---|---|---|---|
| 4 (3.33) | 2 (1.67) | 0.448 | 2.034 (0.365–11.323) | 0.334 | |
| 12 (10) | 10 (8.33) | 0.823 | 1.222 (0.506–2.947) | 0.098 | |
| 0 | 4 (3.33) | 0.060 | – | – | |
| 2 (1.67) | 3 (2.50) | 0.684 | 0.661 (0.108–4.028) | 0.796 | |
| 3 (2.50) | 11 (9.17) | 0.030 | 0.254 (0.069–0.935) | 0.384 | |
| 2 (1.67) | 3 (2.50) | 0.684 | 0.661 (0.108–4.028) | 0.796 | |
| 1 (0.83) | 1 (0.83) | 1.00 | 1.00 (0.061–16.175) | – | |
| 7 (5.83) | 8 (6.66) | 0.797 | 0.867 (0.304–2.472) | 0.068 | |
| 0 | 2 (1.67) | 0.248 | – | – | |
| 1 (0.83) | 1 (0.83) | 1.00 | 1.00 (0.061–16.175) | – | |
| 2 (1.67) | 3 (2.50) | 0.684 | 0.661 (0.108–4.028) | 0.796 | |
| 0 | 2 (1.67) | 0.248 | – | – | |
| 1 (0.83) | 6 (6.66) | 0.066 | 0.159 (0.018–1.347) | 0.428 | |
| 1 (0.83) | 3 (2.50) | 0.371 | 0.327 (0.033–3.196) | 0.339 | |
| 1 (0.83) | 4 (3.33) | 0.214 | 0.243 (0.026–2.213) | 0.383 | |
| 1 (0.83) | 0 | 0.499 | – | – | |
| 13 (10.83) | 16 (13.33) | 0.564 | 0.789 (0.362–1.722) | 0.106 | |
| 63 (52.50) | 28 (23.33) | 0.0001 | 3.631 (2.086–6.322) | 0.521 | |
| 1 (0.83) | 4 (3.33) | 0.214 | 0.243 (0.026–2.213) | 0.383 | |
| 2 (1.67) | 5 (4.16) | 0.282 | 0.389 (0.074–2.049) | 0.407 | |
| 2 (1.67) | 3 (2.50) | 0.684 | 0.661 (0.108–4.028) | 0.796 | |
| 1 (0.83) | 2 (1.67) | 0.623 | 0.495 (0.044–5.542) | 0.361 |
Notes:
Data for EF.
Statistically significant using Fisher’s exact test.
P = 0.66 Bonferroni corrected.
P = 0.0022 Bonferroni corrected.
Abbreviations: N, number of alleles; BD, Behcet’s disease; EF, etiological fraction; PF, preventive fraction.
Comparison of allele frequencies of HLA-B in active and nonactive Behcet’s disease.
| ACTIVE (34) | NON ACTIVE (26) | ODDS RATIO | EF | ||
|---|---|---|---|---|---|
| 2 (2.95) | 2 (3.85) | 1.00 | 0.757 (0.103–0.565) | 0.114 | |
| 8 (11.76) | 4 (7.70) | 0.549 | 1.601 (0.454–5.634) | 0.238 | |
| 1 (1.47) | 1 (1.92) | 1.00 | 0.761 (0.046–12.463) | – | |
| 1 (1.47) | 2 (3.85) | 0.578 | 0.373 (0.032–4.231) | 0.355 | |
| 0 | 2 (3.85) | 0.185 | – | – | |
| 1 (1.47) | 0 | 0.999 | – | – | |
| 3 (4.41) | 4 (7.70) | 0.465 | 0.553 (0.118–2.590) | 0.254 | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 1 (1.47) | 1 (1.92) | 1.00 | 0.761 (0.046–12.463) | – | |
| 1 (1.47) | 0 | 0.999 | – | – | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 1 (1.47) | 0 | 0.999 | – | – | |
| 6 (8.82) | 7 (13.5) | 0.555 | 0.622 (0.195–1.976) | 0.218 | |
| 39 (57.35) | 25 (48.07) | 0.358 | 1.452 (0.702–3.001) | 0.189 | |
| 0 | 1 (1.92) | 0.433 | – | – | |
| 1 (1.47) | 0 | 0.999 | – | – | |
| 2 (2.95) | 0 | 0.504 | – | – | |
| 1 (1.47) | 0 | 0.999 | – | – |
Note:
Data for EF.
Abbreviations: N, number of alleles; EF, etiological fraction; PF, preventive fraction.
HLA allele frequencies and their association with Behcet’s disease.
| ALLELE | BD (60) | CONTROLS (60) | ODDS RATIO | |
|---|---|---|---|---|
| 14 (23.33) | 34 (56.67) | Ref | – | |
| 17 (28.33) | 2 (3.33) | 20.64 (4.20–101.41) | 0.0001 | |
| 29 (48.34) | 24 (40.00) | 2.93 (1.28–6.69) | 0.010 | |
| 47 (78/0.33) | 56 (93.33) | Ref | – | |
| 0 | 0 | – | – | |
| 13 (21.67) | 4 (6.67) | 3.87 (1.18–12.67) | 0.025 | |
| 50 (83.33) | 58 (96.67) | Ref | – | |
| 3 (5.00) | 0 | – | – | |
| 7 (11.67) | 2 (3.33) | 4.06 (0.81–20.44) | 0.089 |
Notes: The binary logistic regression analysis was performed for each of homozygous and heterozygous HLA alleles contributing independently to Behcet’s disease.
Statistically significant.
Abbreviations: HH, homozygous; Hh, heterozygous; hh, no allele; N, number of subjects.