Literature DB >> 27540273

A framework for incorporating DTI Atlas Builder registration into Tract-Based Spatial Statistics and a simulated comparison to standard TBSS.

Matthew Leming1, Rachel Steiner2, Martin Styner3.   

Abstract

Tract-based spatial statistics (TBSS)6 is a software pipeline widely employed in comparative analysis of the white matter integrity from diffusion tensor imaging (DTI) datasets. In this study, we seek to evaluate the relationship between different methods of atlas registration for use with TBSS and different measurements of DTI (fractional anisotropy, FA, axial diffusivity, AD, radial diffusivity, RD, and medial diffusivity, MD). To do so, we have developed a novel tool that builds on existing diffusion atlas building software, integrating it into an adapted version of TBSS called DAB-TBSS (DTI Atlas Builder-Tract-Based Spatial Statistics) by using the advanced registration offered in DTI Atlas Builder7. To compare the effectiveness of these two versions of TBSS, we also propose a framework for simulating population differences for diffusion tensor imaging data, providing a more substantive means of empirically comparing DTI group analysis programs such as TBSS. In this study, we used 33 diffusion tensor imaging datasets and simulated group-wise changes in this data by increasing, in three different simulations, the principal eigenvalue (directly altering AD), the second and third eigenvalues (RD), and all three eigenvalues (MD) in the genu, the right uncinate fasciculus, and the left IFO. Additionally, we assessed the benefits of comparing the tensors directly using a functional analysis of diffusion tensor tract statistics (FADTTS10). Our results indicate comparable levels of FA-based detection between DAB-TBSS and TBSS, with standard TBSS registration reporting a higher rate of false positives in other measurements of DTI. Within the simulated changes investigated here, this study suggests that the use of DTI Atlas Builder's registration enhances TBSS group-based studies.

Entities:  

Keywords:  DTI Atlas Builder; Diffusion Tensor Imaging; Registration; Tract-Based Spatial Statistics; White Matter

Year:  2016        PMID: 27540273      PMCID: PMC4987084          DOI: 10.1117/12.2216517

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  10 in total

1.  Deformable registration of diffusion tensor MR images with explicit orientation optimization.

Authors:  Hui Zhang; Paul A Yushkevich; Daniel C Alexander; James C Gee
Journal:  Med Image Anal       Date:  2006-08-08       Impact factor: 8.545

2.  Methodological considerations on tract-based spatial statistics (TBSS).

Authors:  Michael Bach; Frederik B Laun; Alexander Leemans; Chantal M W Tax; Geert J Biessels; Bram Stieltjes; Klaus H Maier-Hein
Journal:  Neuroimage       Date:  2014-06-16       Impact factor: 6.556

3.  Axial diffusivity is increased in the degenerating superior cerebellar peduncles of Friedreich's ataxia.

Authors:  Riccardo Della Nave; Andrea Ginestroni; Stefano Diciotti; Elena Salvatore; Andrea Soricelli; Mario Mascalchi
Journal:  Neuroradiology       Date:  2010-12-03       Impact factor: 2.804

4.  MR diffusion tensor spectroscopy and imaging.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

5.  FADTTS: functional analysis of diffusion tensor tract statistics.

Authors:  Hongtu Zhu; Linglong Kong; Runze Li; Martin Styner; Guido Gerig; Weili Lin; John H Gilmore
Journal:  Neuroimage       Date:  2011-02-16       Impact factor: 6.556

6.  VARYING COEFFICIENT MODEL FOR MODELING DIFFUSION TENSORS ALONG WHITE MATTER TRACTS.

Authors:  Ying Yuan; Hongtu Zhu; Martin Styner; John H Gilmore; J S Marron
Journal:  Ann Appl Stat       Date:  2013-03       Impact factor: 2.083

Review 7.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

8.  Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data.

Authors:  Stephen M Smith; Mark Jenkinson; Heidi Johansen-Berg; Daniel Rueckert; Thomas E Nichols; Clare E Mackay; Kate E Watkins; Olga Ciccarelli; M Zaheer Cader; Paul M Matthews; Timothy E J Behrens
Journal:  Neuroimage       Date:  2006-04-19       Impact factor: 6.556

9.  UNC-Utah NA-MIC framework for DTI fiber tract analysis.

Authors:  Audrey R Verde; Francois Budin; Jean-Baptiste Berger; Aditya Gupta; Mahshid Farzinfar; Adrien Kaiser; Mihye Ahn; Hans Johnson; Joy Matsui; Heather C Hazlett; Anuja Sharma; Casey Goodlett; Yundi Shi; Sylvain Gouttard; Clement Vachet; Joseph Piven; Hongtu Zhu; Guido Gerig; Martin Styner
Journal:  Front Neuroinform       Date:  2014-01-09       Impact factor: 4.081

10.  Improved DTI registration allows voxel-based analysis that outperforms tract-based spatial statistics.

Authors:  Christopher G Schwarz; Robert I Reid; Jeffrey L Gunter; Matthew L Senjem; Scott A Przybelski; Samantha M Zuk; Jennifer L Whitwell; Prashanthi Vemuri; Keith A Josephs; Kejal Kantarci; Paul M Thompson; Ronald C Petersen; Clifford R Jack
Journal:  Neuroimage       Date:  2014-03-18       Impact factor: 6.556

  10 in total
  2 in total

1.  Diffusion tensor imaging study of the microstructural changes in the white matter of patients with herpes zoster and postherpetic neuralgia.

Authors:  Jian Jiang; Qing Huang; Shuda Hong; Qing Luo; Xian Liu; Xiaoyan Hou; Lili Gu
Journal:  Am J Transl Res       Date:  2022-06-15       Impact factor: 3.940

2.  Free water elimination improves test-retest reproducibility of diffusion tensor imaging indices in the brain: A longitudinal multisite study of healthy elderly subjects.

Authors:  Angela Albi; Ofer Pasternak; Ludovico Minati; Moira Marizzoni; David Bartrés-Faz; Núria Bargalló; Beatriz Bosch; Paolo Maria Rossini; Camillo Marra; Bernhard Müller; Ute Fiedler; Jens Wiltfang; Luca Roccatagliata; Agnese Picco; Flavio Mariano Nobili; Oliver Blin; Julien Sein; Jean-Philippe Ranjeva; Mira Didic; Stephanie Bombois; Renaud Lopes; Régis Bordet; Hélène Gros-Dagnac; Pierre Payoux; Giada Zoccatelli; Franco Alessandrini; Alberto Beltramello; Antonio Ferretti; Massimo Caulo; Marco Aiello; Carlo Cavaliere; Andrea Soricelli; Lucilla Parnetti; Roberto Tarducci; Piero Floridi; Magda Tsolaki; Manos Constantinidis; Antonios Drevelegas; Giovanni Frisoni; Jorge Jovicich
Journal:  Hum Brain Mapp       Date:  2016-08-13       Impact factor: 5.038

  2 in total

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