| Literature DB >> 27536419 |
See Mun Lee1, Kong Mun Lo1, Sang Loon Tan1, Edward R T Tiekink1.
Abstract
In the solid state, the title compound, C12H16BrNO5 [systematic name: 4-bromo-2-((1E)-{[1,3-dihy-droxy-2-(hy-droxy-meth-yl)propan-2-yl]iminium-yl}meth-yl)-6-meth-oxy-benzen-1-olate], C12H16BrNO5, is found in the keto-amine tautomeric form, with an intra-molecular iminium-N-H⋯O(phenolate) hydrogen bond and an E conformation about the C=N bond. Both gauche (two) and anti relationships are found for the methyl-hydroxy groups. In the crystal, a supra-molecular layer in the bc plane is formed via hy-droxy-O-H⋯O(hy-droxy) and charge-assisted hy-droxy-O-H⋯O(phenolate) hydrogen-bonding inter-actions; various C-H⋯O inter-actions provide additional cohesion to the layers, which stack along the a axis with no directional inter-actions between them. A Hirshfeld surface analysis confirms the lack of specific inter-actions in the inter-layer region.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; hydrogen bonding; zwitterion
Year: 2016 PMID: 27536419 PMCID: PMC4971878 DOI: 10.1107/S2056989016012159
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I), showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The intramolecular N—H⋯O hydrogen bond is shown as a double-dashed line (see Table 1 ▸)
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1N⋯O1 | 0.85 (2) | 1.90 (2) | 2.608 (3) | 140 (3) |
| O2—H2O⋯O4i | 0.82 (2) | 1.93 (2) | 2.741 (3) | 170 (3) |
| O3—H3O⋯O2ii | 0.81 (2) | 1.91 (2) | 2.704 (3) | 167 (4) |
| O4—H4O⋯O1iii | 0.82 (3) | 1.98 (3) | 2.760 (3) | 158 (3) |
| C7—H7⋯O1iii | 0.93 | 2.55 | 3.429 (4) | 158 |
| C9—H9 | 0.97 | 2.51 | 3.242 (4) | 132 |
| C11—H11 | 0.97 | 2.39 | 3.353 (3) | 171 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2The molecular packing in (I), showing (a) a view of the supramolecular layer sustained by O—H⋯O hydrogen bonding, shown as orange dashed lines, and (b) a view of the unit-cell contents shown in projection down the b axis, highlighting the stacking of layers along the a axis. In (a), only acidic H atoms are shown.
Figure 3(a) Overall Hirshfeld surface and the two-dimensional fingerprint plot for (I), and d norm surfaces and two-dimensional plots associated with (b) O⋯H/H⋯O, (c) Br⋯H/H⋯Br and (d) C⋯H/H⋯C interactions.
Figure 4Percentage distribution of the corresponding close contacts to the Hirshfeld surface of (I).
Figure 5The d norm surface for (I), highlighting the O⋯H hydrogen-bonding interactions which connect molecules in the molecular packing.
Figure 6(a) The electrostatic potential map of (I) within the range of −0.008 to 0.008 au and (b) the ESP mapped over the Hirshfeld surface, showing the attraction between the electronegative (red) and electropositive (blue) sites in (I).
Figure 7Overlay diagrams for (I) (red image), (II) (green), (III) (blue) and (IV) (pink). Images have been drawn so the benzene rings overlap.
Experimental details
| Crystal data | |
| Chemical formula | C12H16BrNO5 |
|
| 334.17 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 12.2872 (9), 10.7186 (8), 10.5830 (8) |
| β (°) | 108.462 (1) |
|
| 1322.06 (17) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 3.13 |
| Crystal size (mm) | 0.26 × 0.10 × 0.08 |
| Data collection | |
| Diffractometer | Bruker SMART APEX |
| Absorption correction | Multi-scan ( |
|
| 0.497, 0.788 |
| No. of measured, independent and observed [ | 5095, 2257, 1923 |
|
| 0.032 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.030, 0.068, 1.04 |
| No. of reflections | 2257 |
| No. of parameters | 185 |
| No. of restraints | 4 |
| Δρmax, Δρmin (e Å−3) | 0.41, −0.54 |
Computer programs: SMART and SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans & Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).
| C12H16BrNO5 | |
| Monoclinic, | Mo |
| Cell parameters from 1493 reflections | |
| θ = 2.6–27.9° | |
| µ = 3.13 mm−1 | |
| β = 108.462 (1)° | |
| Prism, yellow | |
| 0.26 × 0.10 × 0.08 mm |
| Bruker SMART APEX diffractometer | 2257 independent reflections |
| Radiation source: fine-focus sealed tube | 1923 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 5095 measured reflections |
| Refinement on | 4 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.41 e Å−3 | |
| 2257 reflections | Δρmin = −0.54 e Å−3 |
| 185 parameters |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.45516 (2) | −0.01276 (3) | 0.80991 (3) | 0.01835 (11) | |
| O1 | 0.79706 (16) | 0.09687 (18) | 0.52558 (18) | 0.0134 (4) | |
| O2 | 1.05037 (18) | 0.27428 (18) | 0.60436 (19) | 0.0141 (5) | |
| H2O | 1.083 (2) | 0.2087 (17) | 0.632 (3) | 0.021* | |
| O3 | 0.96322 (18) | 0.60240 (19) | 0.62300 (19) | 0.0174 (5) | |
| H3O | 0.948 (3) | 0.641 (3) | 0.5535 (19) | 0.026* | |
| O4 | 0.85256 (17) | 0.54263 (18) | 0.83553 (19) | 0.0132 (4) | |
| H4O | 0.824 (3) | 0.517 (3) | 0.891 (2) | 0.020* | |
| O5 | 0.70096 (17) | −0.12504 (18) | 0.49502 (19) | 0.0153 (5) | |
| N1 | 0.8572 (2) | 0.2954 (2) | 0.6738 (2) | 0.0118 (5) | |
| H1N | 0.865 (3) | 0.245 (2) | 0.615 (2) | 0.014* | |
| C1 | 0.7122 (2) | 0.1554 (3) | 0.6915 (3) | 0.0125 (6) | |
| C2 | 0.7298 (2) | 0.0719 (3) | 0.5940 (3) | 0.0110 (6) | |
| C3 | 0.6701 (2) | −0.0452 (3) | 0.5783 (3) | 0.0122 (6) | |
| C4 | 0.5921 (2) | −0.0711 (3) | 0.6427 (3) | 0.0133 (6) | |
| H4 | 0.5531 | −0.1467 | 0.6289 | 0.016* | |
| C5 | 0.5715 (2) | 0.0190 (3) | 0.7308 (3) | 0.0146 (6) | |
| C6 | 0.6309 (2) | 0.1276 (3) | 0.7580 (3) | 0.0140 (6) | |
| H6 | 0.6186 | 0.1835 | 0.8193 | 0.017* | |
| C7 | 0.7801 (2) | 0.2645 (3) | 0.7279 (3) | 0.0109 (6) | |
| H7 | 0.7689 | 0.3161 | 0.7933 | 0.013* | |
| C8 | 0.9361 (2) | 0.4026 (3) | 0.7066 (3) | 0.0110 (6) | |
| C9 | 1.0558 (2) | 0.3539 (3) | 0.7151 (3) | 0.0129 (6) | |
| H9A | 1.1060 | 0.4239 | 0.7159 | 0.016* | |
| H9B | 1.0878 | 0.3079 | 0.7975 | 0.016* | |
| C10 | 0.8904 (2) | 0.4963 (2) | 0.5932 (3) | 0.0120 (6) | |
| H10A | 0.8904 | 0.4597 | 0.5094 | 0.014* | |
| H10B | 0.8124 | 0.5201 | 0.5856 | 0.014* | |
| C11 | 0.9462 (2) | 0.4610 (3) | 0.8413 (3) | 0.0121 (6) | |
| H11A | 0.9492 | 0.3952 | 0.9052 | 0.014* | |
| H11B | 1.0175 | 0.5076 | 0.8725 | 0.014* | |
| C12 | 0.6500 (3) | −0.2459 (3) | 0.4763 (3) | 0.0216 (7) | |
| H12A | 0.6684 | −0.2879 | 0.5606 | 0.032* | |
| H12B | 0.6791 | −0.2933 | 0.4170 | 0.032* | |
| H12C | 0.5683 | −0.2380 | 0.4388 | 0.032* |
| Br1 | 0.01640 (17) | 0.01891 (18) | 0.02421 (18) | −0.00122 (13) | 0.01279 (13) | 0.00285 (13) |
| O1 | 0.0139 (11) | 0.0159 (11) | 0.0136 (10) | −0.0018 (8) | 0.0089 (9) | −0.0016 (8) |
| O2 | 0.0205 (12) | 0.0093 (10) | 0.0139 (11) | 0.0039 (9) | 0.0075 (9) | 0.0016 (8) |
| O3 | 0.0284 (13) | 0.0112 (11) | 0.0141 (11) | −0.0034 (9) | 0.0091 (10) | 0.0029 (8) |
| O4 | 0.0141 (11) | 0.0153 (11) | 0.0145 (11) | 0.0004 (8) | 0.0108 (9) | −0.0009 (9) |
| O5 | 0.0192 (12) | 0.0123 (10) | 0.0173 (11) | −0.0026 (9) | 0.0099 (9) | −0.0049 (9) |
| N1 | 0.0151 (13) | 0.0091 (12) | 0.0109 (13) | −0.0001 (10) | 0.0034 (11) | −0.0023 (10) |
| C1 | 0.0106 (15) | 0.0127 (15) | 0.0145 (15) | −0.0002 (12) | 0.0043 (12) | 0.0015 (12) |
| C2 | 0.0079 (14) | 0.0123 (15) | 0.0110 (14) | 0.0025 (11) | 0.0008 (12) | 0.0037 (12) |
| C3 | 0.0094 (15) | 0.0149 (15) | 0.0126 (15) | 0.0007 (12) | 0.0038 (12) | −0.0008 (12) |
| C4 | 0.0132 (16) | 0.0104 (14) | 0.0142 (15) | −0.0009 (12) | 0.0013 (12) | 0.0009 (12) |
| C5 | 0.0122 (15) | 0.0180 (16) | 0.0147 (15) | −0.0013 (12) | 0.0060 (12) | 0.0054 (12) |
| C6 | 0.0140 (15) | 0.0140 (15) | 0.0145 (15) | 0.0035 (12) | 0.0052 (12) | 0.0007 (12) |
| C7 | 0.0121 (15) | 0.0098 (14) | 0.0115 (14) | 0.0028 (11) | 0.0049 (12) | 0.0025 (11) |
| C8 | 0.0124 (15) | 0.0105 (14) | 0.0114 (14) | −0.0008 (11) | 0.0055 (12) | −0.0004 (11) |
| C9 | 0.0137 (16) | 0.0124 (15) | 0.0137 (15) | −0.0019 (12) | 0.0056 (12) | −0.0010 (11) |
| C10 | 0.0132 (14) | 0.0117 (14) | 0.0118 (14) | 0.0021 (12) | 0.0052 (11) | −0.0028 (12) |
| C11 | 0.0123 (15) | 0.0117 (14) | 0.0128 (15) | 0.0016 (12) | 0.0048 (12) | −0.0002 (11) |
| C12 | 0.0263 (19) | 0.0138 (16) | 0.0267 (18) | −0.0091 (13) | 0.0112 (15) | −0.0070 (13) |
| Br1—C5 | 1.902 (3) | C4—C5 | 1.420 (4) |
| O1—C2 | 1.287 (3) | C4—H4 | 0.9300 |
| O2—C9 | 1.434 (3) | C5—C6 | 1.355 (4) |
| O2—H2O | 0.818 (10) | C6—H6 | 0.9300 |
| O3—C10 | 1.419 (3) | C7—H7 | 0.9300 |
| O3—H3O | 0.815 (10) | C8—C11 | 1.525 (4) |
| O4—C11 | 1.432 (3) | C8—C10 | 1.529 (4) |
| O4—H4O | 0.819 (10) | C8—C9 | 1.536 (4) |
| O5—C3 | 1.365 (3) | C9—H9A | 0.9700 |
| O5—C12 | 1.425 (3) | C9—H9B | 0.9700 |
| N1—C7 | 1.295 (4) | C10—H10A | 0.9700 |
| N1—C8 | 1.473 (4) | C10—H10B | 0.9700 |
| N1—H1N | 0.856 (10) | C11—H11A | 0.9700 |
| C1—C7 | 1.417 (4) | C11—H11B | 0.9700 |
| C1—C6 | 1.424 (4) | C12—H12A | 0.9600 |
| C1—C2 | 1.432 (4) | C12—H12B | 0.9600 |
| C2—C3 | 1.438 (4) | C12—H12C | 0.9600 |
| C3—C4 | 1.369 (4) | ||
| C9—O2—H2O | 109 (2) | N1—C8—C10 | 106.1 (2) |
| C10—O3—H3O | 105 (2) | C11—C8—C10 | 111.4 (2) |
| C11—O4—H4O | 107 (2) | N1—C8—C9 | 107.2 (2) |
| C3—O5—C12 | 117.3 (2) | C11—C8—C9 | 107.0 (2) |
| C7—N1—C8 | 127.9 (2) | C10—C8—C9 | 112.1 (2) |
| C7—N1—H1N | 115 (2) | O2—C9—C8 | 111.0 (2) |
| C8—N1—H1N | 117 (2) | O2—C9—H9A | 109.4 |
| C7—C1—C6 | 118.9 (3) | C8—C9—H9A | 109.4 |
| C7—C1—C2 | 120.1 (3) | O2—C9—H9B | 109.4 |
| C6—C1—C2 | 121.0 (3) | C8—C9—H9B | 109.4 |
| O1—C2—C1 | 123.0 (3) | H9A—C9—H9B | 108.0 |
| O1—C2—C3 | 120.8 (3) | O3—C10—C8 | 107.6 (2) |
| C1—C2—C3 | 116.2 (3) | O3—C10—H10A | 110.2 |
| O5—C3—C4 | 125.2 (3) | C8—C10—H10A | 110.2 |
| O5—C3—C2 | 112.7 (2) | O3—C10—H10B | 110.2 |
| C4—C3—C2 | 122.1 (3) | C8—C10—H10B | 110.2 |
| C3—C4—C5 | 119.2 (3) | H10A—C10—H10B | 108.5 |
| C3—C4—H4 | 120.4 | O4—C11—C8 | 112.6 (2) |
| C5—C4—H4 | 120.4 | O4—C11—H11A | 109.1 |
| C6—C5—C4 | 121.8 (3) | C8—C11—H11A | 109.1 |
| C6—C5—Br1 | 119.3 (2) | O4—C11—H11B | 109.1 |
| C4—C5—Br1 | 118.8 (2) | C8—C11—H11B | 109.1 |
| C5—C6—C1 | 119.3 (3) | H11A—C11—H11B | 107.8 |
| C5—C6—H6 | 120.3 | O5—C12—H12A | 109.5 |
| C1—C6—H6 | 120.3 | O5—C12—H12B | 109.5 |
| N1—C7—C1 | 122.7 (3) | H12A—C12—H12B | 109.5 |
| N1—C7—H7 | 118.6 | O5—C12—H12C | 109.5 |
| C1—C7—H7 | 118.6 | H12A—C12—H12C | 109.5 |
| N1—C8—C11 | 113.2 (2) | H12B—C12—H12C | 109.5 |
| C7—C1—C2—O1 | −7.6 (4) | C2—C1—C6—C5 | 1.7 (4) |
| C6—C1—C2—O1 | 175.5 (2) | C8—N1—C7—C1 | −177.2 (3) |
| C7—C1—C2—C3 | 170.7 (2) | C6—C1—C7—N1 | 178.9 (3) |
| C6—C1—C2—C3 | −6.2 (4) | C2—C1—C7—N1 | 1.9 (4) |
| C12—O5—C3—C4 | −1.6 (4) | C7—N1—C8—C11 | 16.6 (4) |
| C12—O5—C3—C2 | 177.7 (2) | C7—N1—C8—C10 | −105.8 (3) |
| O1—C2—C3—O5 | 5.3 (4) | C7—N1—C8—C9 | 134.3 (3) |
| C1—C2—C3—O5 | −173.1 (2) | N1—C8—C9—O2 | 45.9 (3) |
| O1—C2—C3—C4 | −175.4 (3) | C11—C8—C9—O2 | 167.6 (2) |
| C1—C2—C3—C4 | 6.2 (4) | C10—C8—C9—O2 | −70.0 (3) |
| O5—C3—C4—C5 | 177.5 (3) | N1—C8—C10—O3 | 178.8 (2) |
| C2—C3—C4—C5 | −1.8 (4) | C11—C8—C10—O3 | 55.2 (3) |
| C3—C4—C5—C6 | −3.2 (4) | C9—C8—C10—O3 | −64.6 (3) |
| C3—C4—C5—Br1 | 175.5 (2) | N1—C8—C11—O4 | −80.2 (3) |
| C4—C5—C6—C1 | 3.2 (4) | C10—C8—C11—O4 | 39.2 (3) |
| Br1—C5—C6—C1 | −175.5 (2) | C9—C8—C11—O4 | 162.0 (2) |
| C7—C1—C6—C5 | −175.2 (3) |
| H··· | ||||
| N1—H1 | 0.85 (2) | 1.90 (2) | 2.608 (3) | 140 (3) |
| O2—H2 | 0.82 (2) | 1.93 (2) | 2.741 (3) | 170 (3) |
| O3—H3 | 0.81 (2) | 1.91 (2) | 2.704 (3) | 167 (4) |
| O4—H4 | 0.82 (3) | 1.98 (3) | 2.760 (3) | 158 (3) |
| C7—H7···O1iii | 0.93 | 2.55 | 3.429 (4) | 158 |
| C9—H9 | 0.97 | 2.51 | 3.242 (4) | 132 |
| C11—H11 | 0.97 | 2.39 | 3.353 (3) | 171 |