Literature DB >> 27536411

Crystal structure of ammonium/potassium trans-bis-(N-methyl-iminodi-acetato-κ(3) O,N,O')chromate(III) from synchrotron data.

Dohyun Moon1, Jong-Ha Choi2.   

Abstract

The structure of the title compound, [(NH4)0.8K0.2]n class="Chemical">[Cr(C5H7NO4)2] (C5H7NO4 is methyl-iminodi-acetate; mida), has been determined from synchrotron data. The Cr(III) atom is located on a centre of symmetry and is coordinated by two N atoms and four O atoms of two facially arranged tridentate mida ligands, displaying a slightly distorted octa-hedral coordination environment. The Cr-N and mean Cr-O bond lengths are 2.0792 (14) and 1.958 (14) Å, respectively. The cation site is located on a twofold rotation axis and shows occupational disorder, being occupied by ammonium and potassium cations in a 0.8:0.2 ratio. In the crystal, inter-molecular hydrogen bonds involving the N-H groups of the ammonium cation as donor and the two non-coordinating O atoms of the carboxyl-ate group as acceptor groups consolidate the three-dimensional packing.

Entities:  

Keywords:  ammonium/potassium salt; bis­(methyl­iminodi­acetato)­chromate(III) ion; crystal structure; hydrogen bonding; mida; synchrotron radiation; trans-facial configuration

Year:  2016        PMID: 27536411      PMCID: PMC4971870          DOI: 10.1107/S2056989016011804

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Methyl­iminodi­acetate (abbreviated here as mida; n class="Chemical">C5H7NO4) can coordinate to a central metal ion as a tridentate ligand through one N atom and two O atoms. The mida ligand differs from iminodi­acetate (ida) in the substitution of the imino hydrogen with a methyl group. This change has significant consequences with respect to the configuration of the bis-chromate(III) complexes with these ligands. Two facial configurations in cis or trans mode relative to the two N atoms have been observed: for example K[Cr(ida)2]·3H2O (Mootz & Wunderlich, 1980 ▸) and Na[Cr(ida)2]·1.5H2O (Li et al., 2003 ▸) are cis-fac structures whereas Na[Cr(mida)2] is a trans-fac structure (Suh et al., 1997 ▸). However, the trans meridional isomer of octa­hedrally coordinated chromium(III) with ida or mida ligands has not yet been identified. In order to confirm the bonding mode of the methyl­iminodi­acetato ligand and its structural arrangement, we report herein on the crystal structure of the title salt, [(NH4)0.8K0.2][Cr(C5H7NO4)2], (I).

Structural commentary

Counter-ionic species play important roles in crystal packings and hydrogen-bonding patterns. The structure reported here is another example of a [n class="Chemical">Cr(mida)2]− salt but with a different cation (Suh et al., 1996 ▸, 1997 ▸). The structural analysis shows that the two tridentate mida dianions octa­hedrally coordinate to the CrIII metal atom through one N atom and two carboxyl­ate O atoms in a facial configuration. The coordinating N atoms are mutually trans due to point group for the entire anionic complex. The asymmetric unit of (I) comprises one half of the CrIII complex anion and one occupationally disordered ammonium/potassium cation (situated on a twofold rotation axis), respectively. An ellipsoid plot of title compound together with the atomic numbering is illustrated in Fig. 1 ▸.
Figure 1

The structures of the mol­ecular entities of (I), showing the atom-numbering scheme. Non-H atoms are shown as displacement ellipsoids at the 50% probability level. The primed atoms are related by symmetry code (−x + 1, −y + 1, −z + 1). Dashed lines represent hydrogen-bonding inter­actions.

The facial configuration of the complex anion in (I) can be compared with that of NH4[Cr(pydc)2] (pydc = pyridine-2,6-di­carboxyl­ate; Moon & Choi, 2015 ▸) where it displays a trans meridional configuration. The Cr—N and mean Cr—O bond lengths involving the n class="Gene">mida ligands are 2.0792 (14) and 1.958 (14) Å, respectively, in good agreement with the values observed for Na[Cr(mida)2] (Suh et al., 1997 ▸). Bond angles about the central chromium atom are 90.23 (6) for O1—Cr1—O3, 84.66 (6) for O1—Cr1—N1 and 82.62 (5)° for N1—Cr1—O3 indicating a distorted octa­hedral coordination environment. The C–O bond lengths within the carboxyl­ate group of the mida ligand range from 1.219 (2) to 1.296 (2) Å and can be compared with values of 1.225 (15) and 1.294 (15) Å for NH4[Cr(pydc)2] (Moon & Choi, 2015 ▸). The slightly longer C—O bond length (C1—O2 and C3—O4) and smaller O—C—O bond angles of the carboxyl­ate groups in the mida ligand of (I) compared to the ligand in Na[Cr(mida)2] (Suh et al., 1997 ▸) may be attributed to the involvement of the two non-coordinating O atoms in hydrogen bonds with the N—H groups of the ammonium cation. The N—C and C—C distances in the mida moieties are close to those found in the free H2mida mol­ecule (Shkol’nikova et al., 1986 ▸) and are equal to 1.479 (2)–1.494 (2) and 1.508 (3)–1.512 (2) Å, respectively.

Supra­molecular features

The pattern of hydrogen bonding around the cation is different from the crystal packing network in the related n class="Chemical">sodium salt (Suh et al., 1996 ▸, 1997 ▸). The cation is linked to four non-coordinating O atoms of carboxyl­ate groups from four neighboring mida ligands through classical N—H⋯O hydrogen bonds (Table 1 ▸). An array of these inter­actions generate a three-dimensional network of mol­ecules whereby individual mol­ecules are stacked along the b-axis direction (Fig. 2 ▸).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1S—H1NS⋯O3i 0.92 (1)2.07 (1)2.9658 (16)166 (3)
N1S—H2NS⋯O20.90 (1)1.95 (1)2.8485 (17)175 (3)

Symmetry code: (i) .

Figure 2

A packing diagram of (I), viewed perpendicular to the ac plane. Dashed lines represent hydrogen-bonding inter­actions N—H⋯O (cyan).

Database survey

A search of the Cambridge Structural Database (Version 5.37, Feb. 2016 with two updates; Groom et al., 2016 ▸) gave just two hits for a complex anion [Cr(C5H7NO4)2]− unit. The crystal structures of Na[n class="Chemical">Cr(mida)2] with three different space groups have been reported and compared previously (Suh et al., 1996 ▸, 1997 ▸).

Synthesis and crystallization

All chemicals were reagent-grade materials and were used without further purification. The starting material, K[Cr(mida)2] was prepared by a method similar to that outlined previously (Wernicke et al., 1977 ▸; Uehara et al., 1970 ▸). The n class="Chemical">potassium salt (0.25 g) was dissolved in 15 mL of water at 343 K and added to 5 mL of water containing 0.50 g of NH4Cl. The resulting solution was filtered to remove any impurities and allowed to stand at room temperature for several days to give pale pink plate-like crystals of the mixed-occupancy ammonium/potassium salt, (I), suitable for X-ray diffraction analysis.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All H atoms of the complex were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C—H distances of 0.97–0.98 Å and with U iso(H) values of 1.5 (meth­yl) and 1.2 times U n class="Chemical">eq (all others) of the parent atoms. The H atoms of the cation were located from difference Fourier maps and refined with DFIX and DANG restraints and fixed N—H distances of 0.855 (9) and 0.869 (9) Å, with U iso(H) values of 1.2U eq(N). The occupancy of mixed-occupied (NH4/K) first was refined and then fixed at a ratio of 0.8:0.2. The corresponding (NH4/K) sites was refined using EXYZ/EADP commands for the two atom types.
Table 2

Experimental details

Crystal data
Chemical formula[(NH4)0.8K0.2][Cr(C5H7NO4)2]
M r 364.48
Crystal system, space groupMonoclinic, C2/c
Temperature (K)243
a, b, c (Å)16.786 (3), 6.5240 (13), 13.925 (3)
β (°)113.19 (3)
V3)1401.8 (6)
Z 4
Radiation typeSynchrotron, λ = 0.610 Å
μ (mm−1)0.61
Crystal size (mm)0.02 × 0.02 × 0.01
 
Data collection
DiffractometerADSC Q210 CCD area-detector
Absorption correctionEmpirical (using intensity measurements) (HKL3000sm SCALEPACK; Otwinowski & Minor, 1997)
T min, T max 0.989, 0.995
No. of measured, independent and observed [I > 2σ(I)] reflections6984, 1833, 1519
R int 0.028
(sin θ/λ)max−1)0.693
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.035, 0.100, 1.05
No. of reflections1833
No. of parameters110
No. of restraints3
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.40, −0.69

Computer programs: PAL BL2D-SMDC (Shin et al., 2016 ▸), HKL3000sm (Otwinowski & Minor, 1997 ▸), SHELXT2014 (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), DIAMOND (Putz & Brandenburg, 2014 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989016011804/wm5304sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016011804/wm5304Isup2.hkl CCDC reference: 1494843 Additional supporting information: crystallographic information; 3D view; checkCIF report
[(NH4)0.8K0.2][Cr(C5H7NO4)2]F(000) = 754
Mr = 364.48Dx = 1.727 Mg m3
Monoclinic, C2/cSynchrotron radiation, λ = 0.610 Å
a = 16.786 (3) ÅCell parameters from 23758 reflections
b = 6.5240 (13) Åθ = 0.4–33.7°
c = 13.925 (3) ŵ = 0.61 mm1
β = 113.19 (3)°T = 243 K
V = 1401.8 (6) Å3Plate, pale pink
Z = 40.02 × 0.02 × 0.01 mm
ADSC Q210 CCD area-detector diffractometer1519 reflections with I > 2σ(I)
Radiation source: PLSII 2D bending magnetRint = 0.028
ω scanθmax = 25.0°, θmin = 2.7°
Absorption correction: empirical (using intensity measurements) (HKL3000sm SCALEPACK; Otwinowski & Minor, 1997)h = −23→23
Tmin = 0.989, Tmax = 0.995k = −9→9
6984 measured reflectionsl = −17→17
1833 independent reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.035w = 1/[σ2(Fo2) + (0.0702P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.100(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.40 e Å3
1833 reflectionsΔρmin = −0.69 e Å3
110 parametersExtinction correction: SHELXL2014 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraintsExtinction coefficient: 0.0118 (19)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Cr10.50000.50000.50000.01108 (14)
O10.53582 (8)0.3160 (2)0.61977 (10)0.0228 (3)
O20.64463 (9)0.2272 (2)0.76630 (10)0.0267 (3)
O30.54917 (8)0.3115 (2)0.42746 (10)0.0228 (3)
O40.65906 (10)0.2681 (2)0.37913 (13)0.0361 (4)
N10.62700 (8)0.6057 (2)0.56638 (10)0.0129 (3)
C10.61393 (11)0.3333 (3)0.68756 (13)0.0175 (3)
C20.67027 (13)0.4929 (3)0.66707 (15)0.0326 (5)
H2A0.68860.59220.72450.039*
H2B0.72250.42600.66680.039*
C30.62435 (11)0.3600 (3)0.42841 (13)0.0196 (4)
C40.66622 (12)0.5484 (3)0.49128 (15)0.0232 (4)
H4A0.72830.52260.52970.028*
H4B0.66010.66330.44350.028*
C50.63441 (13)0.8296 (3)0.58441 (19)0.0333 (5)
H5A0.69480.86990.60860.050*
H5B0.61210.86530.63680.050*
H5C0.60120.90030.51970.050*
K1S0.5000−0.0201 (2)0.75000.0275 (3)0.2
N1S0.5000−0.0201 (2)0.75000.0275 (3)0.8
H1NS0.5139 (17)−0.091 (4)0.8115 (14)0.033*0.8
H2NS0.5476 (13)0.052 (4)0.757 (2)0.033*0.8
U11U22U33U12U13U23
Cr10.00847 (19)0.01210 (19)0.0120 (2)−0.00089 (12)0.00332 (13)−0.00138 (12)
O10.0173 (6)0.0248 (6)0.0209 (6)−0.0064 (5)0.0018 (5)0.0078 (5)
O20.0231 (7)0.0300 (7)0.0217 (7)0.0003 (5)0.0030 (5)0.0107 (5)
O30.0201 (6)0.0223 (6)0.0290 (7)−0.0052 (5)0.0130 (5)−0.0119 (5)
O40.0328 (8)0.0430 (9)0.0416 (9)−0.0005 (7)0.0243 (7)−0.0173 (7)
N10.0110 (6)0.0145 (6)0.0134 (6)−0.0023 (5)0.0050 (5)−0.0013 (5)
C10.0174 (8)0.0198 (8)0.0152 (8)−0.0010 (6)0.0063 (6)0.0000 (6)
C20.0205 (9)0.0530 (14)0.0160 (9)−0.0150 (8)−0.0018 (7)0.0125 (8)
C30.0201 (8)0.0219 (8)0.0185 (9)0.0005 (6)0.0094 (6)−0.0027 (6)
C40.0203 (8)0.0327 (9)0.0226 (10)−0.0081 (7)0.0148 (7)−0.0083 (7)
C50.0221 (9)0.0186 (9)0.0574 (14)−0.0070 (7)0.0137 (9)−0.0129 (8)
K1S0.0277 (7)0.0278 (8)0.0270 (8)0.0000.0107 (6)0.000
N1S0.0277 (7)0.0278 (8)0.0270 (8)0.0000.0107 (6)0.000
Cr1—O11.9479 (13)C2—H2B0.9800
Cr1—O1i1.9479 (13)C3—C41.512 (2)
Cr1—O31.9673 (12)C3—K1Sii3.371 (2)
Cr1—O3i1.9673 (12)C4—H4A0.9800
Cr1—N12.0792 (14)C4—H4B0.9800
Cr1—N1i2.0792 (14)C5—H5A0.9700
O1—C11.284 (2)C5—H5B0.9700
O1—K1S3.0524 (17)C5—H5C0.9700
O2—C11.226 (2)K1S—O2iii2.8484 (16)
O2—K1S2.8485 (17)K1S—O3iv2.9658 (16)
O3—C31.296 (2)K1S—O3ii2.9658 (16)
O3—K1Sii2.9658 (16)K1S—O4iv3.033 (2)
O4—C31.219 (2)K1S—O4ii3.033 (2)
O4—K1Sii3.033 (2)K1S—O1iii3.0524 (17)
N1—C51.479 (2)K1S—C1iii3.322 (2)
N1—C41.486 (2)K1S—C3ii3.371 (2)
N1—C21.494 (2)K1S—C3iv3.371 (2)
C1—C21.508 (3)N1S—H1NS0.920 (10)
C1—K1S3.322 (2)N1S—H2NS0.899 (10)
C2—H2A0.9800
O1—Cr1—O1i180.00 (5)O2—K1S—O3ii112.23 (4)
O1—Cr1—O390.23 (6)O3iv—K1S—O3ii100.26 (7)
O1i—Cr1—O389.77 (6)O2iii—K1S—O4iv150.81 (4)
O1—Cr1—O3i89.77 (6)O2—K1S—O4iv74.40 (4)
O1i—Cr1—O3i90.23 (6)O3iv—K1S—O4iv43.35 (4)
O3—Cr1—O3i180.0O3ii—K1S—O4iv92.48 (6)
O1—Cr1—N184.66 (6)O2iii—K1S—O4ii74.40 (4)
O1i—Cr1—N195.34 (6)O2—K1S—O4ii150.82 (4)
O3—Cr1—N182.62 (5)O3iv—K1S—O4ii92.48 (6)
O3i—Cr1—N197.38 (5)O3ii—K1S—O4ii43.36 (4)
O1—Cr1—N1i95.34 (6)O4iv—K1S—O4ii115.53 (8)
O1i—Cr1—N1i84.66 (6)O2iii—K1S—O1iii43.90 (4)
O3—Cr1—N1i97.38 (5)O2—K1S—O1iii84.65 (6)
O3i—Cr1—N1i82.62 (5)O3iv—K1S—O1iii91.19 (4)
N1—Cr1—N1i180.00 (7)O3ii—K1S—O1iii154.19 (4)
C1—O1—Cr1117.20 (11)O4iv—K1S—O1iii111.36 (5)
C1—O1—K1S90.53 (10)O4ii—K1S—O1iii113.71 (4)
Cr1—O1—K1S152.23 (6)O2iii—K1S—O184.65 (6)
C1—O2—K1S101.75 (11)O2—K1S—O143.90 (4)
C3—O3—Cr1116.48 (11)O3iv—K1S—O1154.19 (4)
C3—O3—K1Sii96.63 (10)O3ii—K1S—O191.19 (4)
Cr1—O3—K1Sii142.48 (6)O4iv—K1S—O1113.71 (4)
C3—O4—K1Sii95.27 (12)O4ii—K1S—O1111.36 (5)
C5—N1—C4109.69 (15)O1iii—K1S—O188.15 (7)
C5—N1—C2110.46 (15)O2iii—K1S—C1iii21.17 (4)
C4—N1—C2110.50 (15)O2—K1S—C1iii98.43 (6)
C5—N1—Cr1113.95 (11)O3iv—K1S—C1iii103.11 (4)
C4—N1—Cr1105.34 (10)O3ii—K1S—C1iii131.52 (4)
C2—N1—Cr1106.75 (10)O4iv—K1S—C1iii132.69 (5)
O2—C1—O1123.79 (16)O4ii—K1S—C1iii93.56 (4)
O2—C1—C2119.04 (16)O1iii—K1S—C1iii22.73 (4)
O1—C1—C2117.17 (15)O1—K1S—C1iii85.72 (6)
O2—C1—K1S57.08 (10)O2iii—K1S—C198.43 (6)
O1—C1—K1S66.74 (9)O2—K1S—C121.17 (4)
C2—C1—K1S175.95 (12)O3iv—K1S—C1131.52 (4)
N1—C2—C1114.11 (15)O3ii—K1S—C1103.11 (4)
N1—C2—H2A108.7O4iv—K1S—C193.56 (4)
C1—C2—H2A108.7O4ii—K1S—C1132.69 (5)
N1—C2—H2B108.7O1iii—K1S—C185.72 (6)
C1—C2—H2B108.7O1—K1S—C122.73 (4)
H2A—C2—H2B107.6C1iii—K1S—C192.12 (7)
O4—C3—O3123.62 (17)O2iii—K1S—C3ii93.03 (5)
O4—C3—C4120.65 (16)O2—K1S—C3ii133.81 (4)
O3—C3—C4115.66 (15)O3iv—K1S—C3ii94.64 (6)
O4—C3—K1Sii63.63 (11)O3ii—K1S—C3ii22.45 (4)
O3—C3—K1Sii60.92 (9)O4iv—K1S—C3ii103.37 (7)
C4—C3—K1Sii166.70 (13)O4ii—K1S—C3ii21.10 (4)
N1—C4—C3112.21 (14)O1iii—K1S—C3ii134.49 (4)
N1—C4—H4A109.2O1—K1S—C3ii104.15 (4)
C3—C4—H4A109.2C1iii—K1S—C3ii113.34 (5)
N1—C4—H4B109.2C1—K1S—C3ii121.12 (4)
C3—C4—H4B109.2O2iii—K1S—C3iv133.81 (4)
H4A—C4—H4B107.9O2—K1S—C3iv93.03 (5)
N1—C5—H5A109.5O3iv—K1S—C3iv22.45 (4)
N1—C5—H5B109.5O3ii—K1S—C3iv94.64 (6)
H5A—C5—H5B109.5O4iv—K1S—C3iv21.10 (4)
N1—C5—H5C109.5O4ii—K1S—C3iv103.37 (7)
H5A—C5—H5C109.5O1iii—K1S—C3iv104.15 (4)
H5B—C5—H5C109.5O1—K1S—C3iv134.49 (4)
O2iii—K1S—O2111.01 (8)C1iii—K1S—C3iv121.12 (4)
O2iii—K1S—O3iv112.23 (4)C1—K1S—C3iv113.34 (5)
O2—K1S—O3iv110.35 (4)C3ii—K1S—C3iv97.73 (8)
O2iii—K1S—O3ii110.35 (4)H1NS—N1S—H2NS105.9 (19)
K1S—O2—C1—O1−1.9 (2)K1Sii—O4—C3—C4−165.65 (16)
K1S—O2—C1—C2178.67 (16)Cr1—O3—C3—O4−173.25 (15)
Cr1—O1—C1—O2−179.97 (14)K1Sii—O3—C3—O4−11.5 (2)
K1S—O1—C1—O21.73 (19)Cr1—O3—C3—C43.7 (2)
Cr1—O1—C1—C2−0.5 (2)K1Sii—O3—C3—C4165.51 (14)
K1S—O1—C1—C2−178.83 (16)Cr1—O3—C3—K1Sii−161.79 (12)
Cr1—O1—C1—K1S178.30 (12)C5—N1—C4—C3−151.02 (16)
C5—N1—C2—C1127.82 (19)C2—N1—C4—C386.96 (18)
C4—N1—C2—C1−110.61 (19)Cr1—N1—C4—C3−27.99 (18)
Cr1—N1—C2—C13.4 (2)O4—C3—C4—N1−165.12 (17)
O2—C1—C2—N1177.29 (16)O3—C3—C4—N117.8 (2)
O1—C1—C2—N1−2.2 (3)K1Sii—C3—C4—N189.7 (5)
K1Sii—O4—C3—O311.2 (2)
D—H···AD—HH···AD···AD—H···A
N1S—H1NS···O3iv0.92 (1)2.07 (1)2.9658 (16)166 (3)
N1S—H2NS···O20.90 (1)1.95 (1)2.8485 (17)175 (3)
  4 in total

1.  BL2D-SMC, the supramolecular crystallography beamline at the Pohang Light Source II, Korea.

Authors:  Jong Won Shin; Kisu Eom; Dohyun Moon
Journal:  J Synchrotron Radiat       Date:  2016-01-01       Impact factor: 2.616

2.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  4 in total

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