| Literature DB >> 27536395 |
Lígia R Gomes1, John Nicolson Low2, André Fonseca3, Maria João Matos3, Fernanda Borges3.
Abstract
The title coumarin derivative, C20H14N2O3, displays intra-molecular N-H⋯O and weak C-H⋯O hydrogen bonds, which probably contribute to the approximate planarity of the mol-ecule [dihedral angle between the coumarin and quinoline ring systems = 6.08 (6)°]. The supra-molecular structures feature C-H⋯O hydrogen bonds and π-π inter-actions, as confirmed by Hirshfeld surface analyses.Entities:
Keywords: Hirshfeld surface analysis; carboxamide; coumarin; crystal structure
Year: 2016 PMID: 27536395 PMCID: PMC4971854 DOI: 10.1107/S2056989016011026
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of the asymmetric unit of (1), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 70% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C314—H314⋯O31i | 0.95 | 2.50 | 3.278 (2) | 139 |
| C8—H8⋯N311ii | 0.95 | 2.68 | 3.394 (3) | 133 |
| C317—H317⋯O31 | 0.95 | 2.29 | 2.903 (2) | 122 |
| N32—H32⋯O2 | 0.907 (18) | 1.879 (18) | 2.686 (2) | 147.3 (15) |
Symmetry codes: (i) ; (ii) ; (iii) .
Selected dihedral angles (°)
| Compound | θ1 (°) | θ2 (°) | θ3 (°) |
|---|---|---|---|
| (1) | 6.08 (6) | 5.0 (12) | 1.73 (11) |
Notes: θ1 is the dihedral angle between the mean planes of the coumarin and quinoline rings; θ2 is the dihedral angle between the mean plane of the coumarin ring and the plane defined by atoms O31/C31/N32; θ3 is the dihedral angle between the mean plane of the quinoline ring and the plane defined by atoms O31/C31/N32.
Figure 2The simple C4 chain in compound (1) formed by the weak C314—H314⋯O3i hydrogen bond. This chain extends by unit translation along the a axis. H atoms not involved in the hydrogen bonding have been omitted. [Symmetry codes: (i) x − 1, y, z; (ii) x + 1,y, z.]
Figure 3Views of the Hirshfeld surface mapped over d norm (left) and fingerprint plot (right, FP) for (1). The highlighted red spots on the top face of the surfaces indicate contact points with the atoms participating in the intermolecular C—H⋯O interactions, whereas those on the middle of the surface corresponds to C⋯C contacts consequent of the π–π stacking. The C⋯C contacts contribute to the higher frequency of the pixels at d e/d i at 1.8° on the FP plot (yellow spot). The FP plot displays two light-blue spikes (external ends corresponding to C⋯ H contacts).
Percentages of atom–atom contacts for (1) (%)
| Contact | H⋯H | H⋯O/O⋯H | H⋯N/N⋯H | C⋯C | N⋯C/C⋯N | H⋯C/C⋯H |
|---|---|---|---|---|---|---|
| (%) | 40.6 | 21.2 | 3.3 | 13.2 | 4.7 | 14.3 |
Selected π–π contacts
| Compound |
|
|
|
|
| Slippage (Å) |
|---|---|---|---|---|---|---|
| 1 |
|
| 3.548 (2) | 3.1477 (4) | 3.3051 (4) | 1.290 |
| 1 |
|
| 3.911 (3) | −3.3848 (4) | −3.3352 (4) | 2.043 |
| 1 |
|
| 3.525 (2) | −3.3851 (4) | −3.2952 (4) | 1.252 |
| 1 |
|
| 3.548 (2) | 3.3050 (4) | 3.1476 (4) | 1.637 |
| 1 |
|
| 3.911 (3) | −3.3352 (4) | −3.3849 (4) | 1.960 |
| 1 |
|
| 3.797 (3) | −3.3389 (4) | −3.5276 (5) | 1.406 |
| 1 |
|
| 3.798 (3) | −3.5277 (5) | −3.3388 (4) | 1.809 |
| 1 |
|
| 3.525 (2) | −3.2951 (4) | −3.3852 (4) | 0.983 |
Notes: CgI(J) = Plane number I(J); Cg–Cg = distance between ring centroids; CgI_Perp = perpendicular distance of CgI on ring J; CgJ_Perp = perpendicular distance of CgJ on ring I; Slippage = distance between CgI and perpendicular projection of CgJ on ring I.
Plane 1 is the plane of the coumarin pyran ring with Cg1 as centroid; Plane 2 is the plane of the quinoline pyridine ring with Cg2 as centroid; Plane 3 is the plane of the coumarin phenyl ring with Cg3 as centroid; Plane 4 is the plane of the quinoline phenyl ring with Cg4 as centroid.
Some planes are repeated since they are inclined to each other and as a result give slightly different slippages
Figure 4Shape index plots showing the interactions arising from π–π stacking. The upper corresponds to the stacking across (, 1, ), while the lower corresponds to the stacking across (, , ).
Figure 5View of the π–π stacking along the b axis.
Experimental details
| Crystal data | |
| Chemical formula | C20H14N2O3 |
|
| 330.33 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 7.799 (3), 7.014 (3), 27.640 (18) |
| β (°) | 90.18 (6) |
|
| 1512.0 (13) |
|
| 4 |
| Radiation type | Synchrotron, λ = 0.68891 Å |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.18 × 0.01 × 0.004 |
| Data collection | |
| Diffractometer | Three-circle diffractometer |
| Absorption correction | Empirical (using intensity measurements) (aimless |
| No. of measured, independent and observed [ | 18408, 4587, 3717 |
|
| 0.060 |
| (sin θ/λ)max (Å−1) | 0.714 |
| Refinement | |
|
| 0.051, 0.156, 1.13 |
| No. of reflections | 4587 |
| No. of parameters | 231 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.54, −0.25 |
Computer programs: GDA http://www.opengda.org/OpenGDA.html, XIA2 0.4.0.370-g47f3bc3 (Winter, 2010 ▸), SHELXT (Sheldrick, 2015a ▸), ShelXle (Hübschle et al., 2011 ▸), SHELXL2014 (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2006 ▸) and PLATON (Spek, 2009 ▸).
| C20H14N2O3 | |
| Monoclinic, | Synchrotron' radiation, λ = 0.68891 Å |
| Cell parameters from 3773 reflections | |
| θ = 2.6–33.9° | |
| µ = 0.09 mm−1 | |
| β = 90.18 (6)° | |
| Needle, colourless | |
| 0.18 × 0.01 × 0.004 mm |
| Three-circle diffractometer | 4587 independent reflections |
| Radiation source: synchrotron, DLS beamline I19, undulator | 3717 reflections with |
| Si 111, double crystal monochromator | |
| Detector resolution: 5.81 pixels mm-1 | θmax = 29.5°, θmin = 2.9° |
| profile data from ω–scans | |
| Absorption correction: empirical (using intensity measurements) aimless ccp4 (Evans, 2006) | |
| 18408 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4587 reflections | Δρmax = 0.54 e Å−3 |
| 231 parameters | Δρmin = −0.25 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.61633 (10) | 0.57511 (12) | 0.33247 (3) | 0.02193 (19) | |
| O2 | 0.42390 (10) | 0.67655 (12) | 0.38475 (3) | 0.0244 (2) | |
| O31 | 0.79011 (10) | 0.65810 (12) | 0.49728 (3) | 0.0240 (2) | |
| N32 | 0.50968 (12) | 0.71842 (13) | 0.47835 (3) | 0.0186 (2) | |
| N311 | 0.21868 (12) | 0.98576 (13) | 0.65151 (3) | 0.0204 (2) | |
| C2 | 0.57274 (14) | 0.62613 (16) | 0.37867 (4) | 0.0196 (2) | |
| C3 | 0.70619 (13) | 0.61438 (15) | 0.41571 (4) | 0.0177 (2) | |
| C4 | 0.86585 (13) | 0.55411 (15) | 0.40316 (4) | 0.0180 (2) | |
| H4 | 0.9519 | 0.5451 | 0.4275 | 0.022* | |
| C5 | 1.07250 (14) | 0.44450 (15) | 0.33910 (4) | 0.0200 (2) | |
| H5 | 1.1628 | 0.4362 | 0.3622 | 0.024* | |
| C4A | 0.90818 (14) | 0.50369 (15) | 0.35425 (4) | 0.0182 (2) | |
| C6 | 1.10480 (15) | 0.39806 (16) | 0.29103 (4) | 0.0222 (2) | |
| C7 | 0.97020 (15) | 0.41362 (17) | 0.25763 (4) | 0.0238 (2) | |
| H7 | 0.9904 | 0.3821 | 0.2247 | 0.029* | |
| C8 | 0.80789 (15) | 0.47398 (17) | 0.27134 (4) | 0.0230 (2) | |
| H8 | 0.7184 | 0.4858 | 0.2482 | 0.028* | |
| C8A | 0.77937 (14) | 0.51669 (16) | 0.31972 (4) | 0.0195 (2) | |
| C31 | 0.67345 (13) | 0.66578 (15) | 0.46783 (4) | 0.0185 (2) | |
| C34A | 0.18814 (13) | 0.89163 (15) | 0.56639 (4) | 0.0176 (2) | |
| C38A | 0.28705 (13) | 0.91692 (15) | 0.60890 (4) | 0.0178 (2) | |
| C61 | 1.27981 (16) | 0.3329 (2) | 0.27477 (5) | 0.0312 (3) | |
| H61A | 1.3103 | 0.2147 | 0.2916 | 0.047* | |
| H61B | 1.3647 | 0.4316 | 0.2824 | 0.047* | |
| H61C | 1.2781 | 0.3101 | 0.2398 | 0.047* | |
| C312 | 0.05500 (14) | 1.03063 (16) | 0.65149 (4) | 0.0219 (2) | |
| H312 | 0.0075 | 1.0795 | 0.6806 | 0.026* | |
| C313 | −0.05445 (14) | 1.01098 (16) | 0.61122 (4) | 0.0219 (2) | |
| H313 | −0.1717 | 1.0466 | 0.6133 | 0.026* | |
| C314 | 0.01123 (13) | 0.93934 (16) | 0.56876 (4) | 0.0199 (2) | |
| H314 | −0.0609 | 0.9220 | 0.5413 | 0.024* | |
| C315 | 0.26757 (13) | 0.82186 (15) | 0.52375 (4) | 0.0183 (2) | |
| H315 | 0.2006 | 0.8037 | 0.4954 | 0.022* | |
| C316 | 0.44016 (14) | 0.78004 (15) | 0.52286 (4) | 0.0178 (2) | |
| C317 | 0.53856 (14) | 0.80040 (16) | 0.56555 (4) | 0.0197 (2) | |
| H317 | 0.6569 | 0.7683 | 0.5655 | 0.024* | |
| C318 | 0.46224 (14) | 0.86712 (16) | 0.60735 (4) | 0.0198 (2) | |
| H318 | 0.5297 | 0.8798 | 0.6358 | 0.024* | |
| H32 | 0.440 (2) | 0.709 (3) | 0.4521 (6) | 0.042 (5)* |
| O1 | 0.0188 (4) | 0.0271 (4) | 0.0199 (4) | −0.0001 (3) | 0.0003 (3) | −0.0025 (3) |
| O2 | 0.0186 (4) | 0.0295 (5) | 0.0250 (4) | 0.0018 (3) | −0.0007 (3) | −0.0027 (3) |
| O31 | 0.0209 (4) | 0.0295 (5) | 0.0216 (4) | 0.0024 (3) | −0.0005 (3) | −0.0043 (3) |
| N32 | 0.0184 (4) | 0.0194 (5) | 0.0180 (4) | 0.0012 (3) | 0.0018 (3) | −0.0009 (3) |
| N311 | 0.0226 (4) | 0.0201 (5) | 0.0186 (5) | −0.0011 (3) | 0.0019 (3) | −0.0011 (3) |
| C2 | 0.0200 (5) | 0.0186 (5) | 0.0203 (5) | −0.0020 (4) | 0.0014 (4) | −0.0007 (4) |
| C3 | 0.0185 (5) | 0.0164 (5) | 0.0183 (5) | −0.0012 (4) | 0.0012 (4) | −0.0004 (4) |
| C4 | 0.0192 (5) | 0.0155 (5) | 0.0193 (5) | −0.0012 (4) | 0.0008 (4) | 0.0000 (4) |
| C5 | 0.0208 (5) | 0.0178 (5) | 0.0214 (5) | −0.0001 (4) | 0.0019 (4) | −0.0001 (4) |
| C4A | 0.0199 (5) | 0.0154 (5) | 0.0194 (5) | −0.0022 (4) | 0.0021 (4) | −0.0006 (4) |
| C6 | 0.0242 (5) | 0.0197 (5) | 0.0227 (5) | −0.0012 (4) | 0.0046 (4) | −0.0018 (4) |
| C7 | 0.0273 (5) | 0.0240 (6) | 0.0202 (5) | −0.0030 (4) | 0.0042 (4) | −0.0024 (4) |
| C8 | 0.0248 (5) | 0.0258 (6) | 0.0185 (5) | −0.0030 (4) | −0.0011 (4) | −0.0013 (4) |
| C8A | 0.0188 (5) | 0.0193 (5) | 0.0202 (5) | −0.0024 (4) | 0.0021 (4) | −0.0007 (4) |
| C31 | 0.0194 (5) | 0.0151 (5) | 0.0212 (5) | −0.0009 (4) | 0.0025 (4) | −0.0005 (4) |
| C34A | 0.0178 (5) | 0.0144 (5) | 0.0205 (5) | −0.0002 (3) | 0.0016 (4) | 0.0011 (4) |
| C38A | 0.0194 (5) | 0.0158 (5) | 0.0181 (5) | −0.0013 (4) | 0.0016 (4) | 0.0003 (4) |
| C61 | 0.0253 (6) | 0.0408 (8) | 0.0274 (6) | 0.0069 (5) | 0.0052 (5) | −0.0060 (5) |
| C312 | 0.0238 (5) | 0.0204 (5) | 0.0214 (5) | −0.0012 (4) | 0.0057 (4) | −0.0012 (4) |
| C313 | 0.0188 (5) | 0.0216 (5) | 0.0251 (6) | 0.0002 (4) | 0.0032 (4) | 0.0006 (4) |
| C314 | 0.0180 (5) | 0.0202 (5) | 0.0215 (5) | −0.0006 (4) | −0.0001 (4) | 0.0015 (4) |
| C315 | 0.0195 (5) | 0.0167 (5) | 0.0188 (5) | 0.0004 (4) | −0.0001 (4) | 0.0003 (4) |
| C316 | 0.0201 (5) | 0.0148 (5) | 0.0185 (5) | −0.0001 (4) | 0.0029 (4) | 0.0006 (4) |
| C317 | 0.0183 (5) | 0.0203 (5) | 0.0206 (5) | 0.0010 (4) | 0.0016 (4) | 0.0002 (4) |
| C318 | 0.0204 (5) | 0.0207 (5) | 0.0185 (5) | −0.0005 (4) | −0.0011 (4) | −0.0002 (4) |
| O1—C2 | 1.3701 (16) | C7—H7 | 0.9500 |
| O1—C8A | 1.3827 (14) | C8—C8A | 1.3887 (18) |
| O2—C2 | 1.2255 (14) | C8—H8 | 0.9500 |
| O31—C31 | 1.2201 (16) | C34A—C38A | 1.4149 (18) |
| N32—C31 | 1.3618 (14) | C34A—C315 | 1.4200 (17) |
| N32—C316 | 1.4136 (16) | C34A—C314 | 1.4214 (15) |
| N32—H32 | 0.907 (18) | C38A—C318 | 1.4111 (16) |
| N311—C312 | 1.3147 (15) | C61—H61A | 0.9800 |
| N311—C38A | 1.3814 (16) | C61—H61B | 0.9800 |
| C2—C3 | 1.4600 (18) | C61—H61C | 0.9800 |
| C3—C4 | 1.3609 (15) | C312—C313 | 1.4075 (19) |
| C3—C31 | 1.5075 (18) | C312—H312 | 0.9500 |
| C4—C4A | 1.4368 (17) | C313—C314 | 1.3769 (17) |
| C4—H4 | 0.9500 | C313—H313 | 0.9500 |
| C5—C6 | 1.3918 (18) | C314—H314 | 0.9500 |
| C5—C4A | 1.4119 (16) | C315—C316 | 1.3779 (15) |
| C5—H5 | 0.9500 | C315—H315 | 0.9500 |
| C4A—C8A | 1.3866 (18) | C316—C317 | 1.4128 (18) |
| C6—C7 | 1.4000 (19) | C317—C318 | 1.3830 (17) |
| C6—C61 | 1.5092 (17) | C317—H317 | 0.9500 |
| C7—C8 | 1.3886 (17) | C318—H318 | 0.9500 |
| C2—O1—C8A | 123.10 (10) | N32—C31—C3 | 115.51 (11) |
| C31—N32—C316 | 129.15 (11) | C38A—C34A—C315 | 119.63 (10) |
| C31—N32—H32 | 111.5 (11) | C38A—C34A—C314 | 117.32 (10) |
| C316—N32—H32 | 119.3 (11) | C315—C34A—C314 | 123.05 (11) |
| C312—N311—C38A | 117.43 (11) | N311—C38A—C318 | 119.26 (11) |
| O2—C2—O1 | 116.17 (11) | N311—C38A—C34A | 122.75 (10) |
| O2—C2—C3 | 126.42 (11) | C318—C38A—C34A | 117.98 (10) |
| O1—C2—C3 | 117.42 (10) | C6—C61—H61A | 109.5 |
| C4—C3—C2 | 119.32 (11) | C6—C61—H61B | 109.5 |
| C4—C3—C31 | 118.40 (11) | H61A—C61—H61B | 109.5 |
| C2—C3—C31 | 122.28 (10) | C6—C61—H61C | 109.5 |
| C3—C4—C4A | 121.96 (11) | H61A—C61—H61C | 109.5 |
| C3—C4—H4 | 119.0 | H61B—C61—H61C | 109.5 |
| C4A—C4—H4 | 119.0 | N311—C312—C313 | 124.28 (11) |
| C6—C5—C4A | 121.27 (12) | N311—C312—H312 | 117.9 |
| C6—C5—H5 | 119.4 | C313—C312—H312 | 117.9 |
| C4A—C5—H5 | 119.4 | C314—C313—C312 | 118.92 (10) |
| C8A—C4A—C5 | 118.13 (11) | C314—C313—H313 | 120.5 |
| C8A—C4A—C4 | 117.61 (11) | C312—C313—H313 | 120.5 |
| C5—C4A—C4 | 124.25 (11) | C313—C314—C34A | 119.27 (11) |
| C5—C6—C7 | 118.28 (11) | C313—C314—H314 | 120.4 |
| C5—C6—C61 | 121.45 (12) | C34A—C314—H314 | 120.4 |
| C7—C6—C61 | 120.28 (11) | C316—C315—C34A | 121.13 (11) |
| C8—C7—C6 | 121.73 (11) | C316—C315—H315 | 119.4 |
| C8—C7—H7 | 119.1 | C34A—C315—H315 | 119.4 |
| C6—C7—H7 | 119.1 | C315—C316—C317 | 119.45 (11) |
| C7—C8—C8A | 118.52 (12) | C315—C316—N32 | 117.26 (11) |
| C7—C8—H8 | 120.7 | C317—C316—N32 | 123.29 (10) |
| C8A—C8—H8 | 120.7 | C318—C317—C316 | 119.86 (10) |
| O1—C8A—C4A | 120.59 (10) | C318—C317—H317 | 120.1 |
| O1—C8A—C8 | 117.36 (11) | C316—C317—H317 | 120.1 |
| C4A—C8A—C8 | 122.06 (11) | C317—C318—C38A | 121.90 (11) |
| O31—C31—N32 | 124.57 (11) | C317—C318—H318 | 119.0 |
| O31—C31—C3 | 119.91 (10) | C38A—C318—H318 | 119.0 |
| C8A—O1—C2—O2 | 179.41 (9) | C4—C3—C31—O31 | 2.12 (16) |
| C8A—O1—C2—C3 | −0.94 (15) | C2—C3—C31—O31 | −178.23 (10) |
| O2—C2—C3—C4 | 179.54 (11) | C4—C3—C31—N32 | −177.74 (9) |
| O1—C2—C3—C4 | −0.06 (15) | C2—C3—C31—N32 | 1.91 (15) |
| O2—C2—C3—C31 | −0.09 (18) | C312—N311—C38A—C318 | 179.98 (10) |
| O1—C2—C3—C31 | −179.70 (9) | C312—N311—C38A—C34A | −0.77 (16) |
| C2—C3—C4—C4A | 0.81 (16) | C315—C34A—C38A—N311 | 179.40 (10) |
| C31—C3—C4—C4A | −179.54 (9) | C314—C34A—C38A—N311 | −0.32 (16) |
| C6—C5—C4A—C8A | −0.76 (16) | C315—C34A—C38A—C318 | −1.34 (15) |
| C6—C5—C4A—C4 | −179.86 (10) | C314—C34A—C38A—C318 | 178.94 (10) |
| C3—C4—C4A—C8A | −0.58 (16) | C38A—N311—C312—C313 | 0.74 (17) |
| C3—C4—C4A—C5 | 178.52 (10) | N311—C312—C313—C314 | 0.39 (18) |
| C4A—C5—C6—C7 | 0.76 (17) | C312—C313—C314—C34A | −1.51 (16) |
| C4A—C5—C6—C61 | −179.40 (11) | C38A—C34A—C314—C313 | 1.45 (15) |
| C5—C6—C7—C8 | 0.15 (18) | C315—C34A—C314—C313 | −178.25 (10) |
| C61—C6—C7—C8 | −179.69 (11) | C38A—C34A—C315—C316 | −0.68 (16) |
| C6—C7—C8—C8A | −1.03 (18) | C314—C34A—C315—C316 | 179.02 (10) |
| C2—O1—C8A—C4A | 1.19 (16) | C34A—C315—C316—C317 | 2.29 (16) |
| C2—O1—C8A—C8 | −178.25 (10) | C34A—C315—C316—N32 | −177.58 (9) |
| C5—C4A—C8A—O1 | −179.57 (9) | C31—N32—C316—C315 | −178.87 (10) |
| C4—C4A—C8A—O1 | −0.41 (15) | C31—N32—C316—C317 | 1.27 (18) |
| C5—C4A—C8A—C8 | −0.15 (17) | C315—C316—C317—C318 | −1.86 (16) |
| C4—C4A—C8A—C8 | 179.00 (10) | N32—C316—C317—C318 | 178.01 (10) |
| C7—C8—C8A—O1 | −179.54 (10) | C316—C317—C318—C38A | −0.20 (17) |
| C7—C8—C8A—C4A | 1.03 (18) | N311—C38A—C318—C317 | −178.93 (10) |
| C316—N32—C31—O31 | 2.43 (19) | C34A—C38A—C318—C317 | 1.78 (16) |
| C316—N32—C31—C3 | −177.72 (10) |
| H··· | ||||
| C314—H314···O31i | 0.95 | 2.50 | 3.278 (2) | 139 |
| C8—H8···N311ii | 0.95 | 2.68 | 3.394 (3) | 133 |
| C317—H317···O31 | 0.95 | 2.29 | 2.903 (2) | 122 |
| N32—H32···O2 | 0.907 (18) | 1.879 (18) | 2.686 (2) | 147.3 (15) |