| Literature DB >> 27536390 |
Karanth N Subbulakshmi1, Badiadka Narayana1, Hemmige S Yathirajan2, Jerry P Jasinski3, Ravindranath S Rathore4, Christopher Glidewell5.
Abstract
In the title compound, C21H17N3O3S, the non-H atoms, apart from those in the benzoyl group, are almost coplanar (r.m.s. deviation = 0.049 Å) and the benzoyl group is almost orthogonal to the plane of the rest of the mol-ecule [dihedral angle = 80.34 (6)°]. In the crystal, a combination of N-H⋯O and asymmetric bifurcated O-H⋯(N,O) hydrogen bonds link the mol-ecules into a three-dimensional network. Weak C-H⋯O inter-actions are also observed.Entities:
Keywords: crystal structure; hydrogen bonding; molecular conformation; supramolecular structure
Year: 2016 PMID: 27536390 PMCID: PMC4971849 DOI: 10.1107/S2056989016010975
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of compound (I), showing displacement ellipsoids drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N11—H11⋯O27i | 0.86 (2) | 2.10 (2) | 2.9400 (18) | 168 (2) |
| N21—H21⋯O1ii | 0.827 (19) | 2.238 (19) | 3.0002 (18) | 153.5 (18) |
| O14—H14⋯O1iii | 0.84 (3) | 1.97 (3) | 2.7727 (19) | 162 (3) |
| O14—H14⋯N12iii | 0.84 (3) | 2.59 (3) | 3.133 (2) | 124 (2) |
| C3—H3⋯O27i | 0.93 | 2.52 | 3.333 (2) | 147 |
| C17—H17⋯O27i | 0.93 | 2.57 | 3.350 (2) | 142 |
| C24—H24⋯O14iv | 0.93 | 2.58 | 3.364 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2Part of the crystal structure of compound (I), showing the formation of a hydrogen-bonded chain of rings parallel to [010]. Hydrogen bonds are shown as dashed lines and, for the sake of clarity, the H atoms not involved in the motif shown have been omitted. The atoms marked with an asterisk (*), a hash (#) or a dollar sign ($) are at the symmetry positions ( − x, − + y, − z), ( − x, + y, − z) and (x, 1 + y, z), respectively.
Figure 3A projection along [010] of part of the crystal structure of compound (I), showing the linking of the [010] chains to form a sheet parallel to (001). Hydrogen bonds are shown as dashed lines and, for the sake of clarity, the H atoms bonded to C atoms have been omitted.
Figure 4A projection along [010] of part of the crystal structure of compound (I), showing the linking of the (001) sheets to form a three-dimensional framework structure. Hydrogen bonds are shown as dashed lines and, for the sake of clarity, the H atoms bonded to C atoms have been omitted.
Experimental details
| Crystal data | |
| Chemical formula | C21H17N3O3S |
|
| 391.43 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 298 |
|
| 22.5212 (7), 10.1879 (4), 17.3592 (5) |
| β (°) | 105.801 (3) |
|
| 3832.5 (2) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.20 |
| Crystal size (mm) | 0.42 × 0.32 × 0.18 |
| Data collection | |
| Diffractometer | Agilent Xcalibur Eos Gemini |
| Absorption correction | Multi-scan ( |
|
| 0.757, 0.965 |
| No. of measured, independent and observed [ | 9963, 4419, 3426 |
|
| 0.024 |
| (sin θ/λ)max (Å−1) | 0.651 |
| Refinement | |
|
| 0.043, 0.113, 1.04 |
| No. of reflections | 4419 |
| No. of parameters | 262 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.24, −0.26 |
Computer programs: CrysAlis PRO (Agilent, 2014 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).
| C21H17N3O3S | |
| Monoclinic, | Mo |
| Cell parameters from 6327 reflections | |
| θ = 3.4–32.0° | |
| µ = 0.20 mm−1 | |
| β = 105.801 (3)° | |
| Plate, colourless | |
| 0.42 × 0.32 × 0.18 mm |
| Agilent Xcalibur Eos Gemini diffractometer | 3426 reflections with |
| Detector resolution: 16.0416 pixels mm-1 | |
| φ and ω scans | θmax = 27.6°, θmin = 3.4° |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014) | |
| 9963 measured reflections | |
| 4419 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4419 reflections | Δρmax = 0.24 e Å−3 |
| 262 parameters | Δρmin = −0.26 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.53659 (7) | 0.43211 (16) | 0.64694 (9) | 0.0306 (3) | |
| O1 | 0.56722 (5) | 0.47222 (13) | 0.71288 (7) | 0.0423 (3) | |
| C2 | 0.47457 (7) | 0.48794 (16) | 0.60847 (9) | 0.0299 (3) | |
| C3 | 0.43369 (7) | 0.43455 (17) | 0.54526 (9) | 0.0347 (4) | |
| H3 | 0.4469 | 0.3586 | 0.5252 | 0.042* | |
| N11 | 0.55560 (6) | 0.33591 (15) | 0.60668 (8) | 0.0348 (3) | |
| H11 | 0.5363 (9) | 0.3157 (19) | 0.5583 (12) | 0.042* | |
| N12 | 0.61135 (6) | 0.27363 (15) | 0.63980 (8) | 0.0350 (3) | |
| C17 | 0.62189 (8) | 0.17766 (18) | 0.59827 (10) | 0.0372 (4) | |
| H17 | 0.5924 | 0.1570 | 0.5509 | 0.045* | |
| C11 | 0.67784 (7) | 0.09896 (17) | 0.62156 (10) | 0.0349 (4) | |
| C12 | 0.72750 (8) | 0.13084 (18) | 0.68643 (10) | 0.0382 (4) | |
| H12 | 0.7261 | 0.2068 | 0.7156 | 0.046* | |
| C13 | 0.77876 (8) | 0.05097 (19) | 0.70785 (10) | 0.0393 (4) | |
| H13 | 0.8115 | 0.0730 | 0.7515 | 0.047* | |
| C14 | 0.78174 (8) | −0.06236 (18) | 0.66441 (10) | 0.0373 (4) | |
| O14 | 0.83122 (6) | −0.14325 (14) | 0.68163 (9) | 0.0524 (4) | |
| H14 | 0.8583 (12) | −0.115 (3) | 0.7211 (15) | 0.079* | |
| C15 | 0.73300 (8) | −0.09439 (18) | 0.59955 (11) | 0.0436 (4) | |
| H15 | 0.7346 | −0.1700 | 0.5701 | 0.052* | |
| C16 | 0.68189 (8) | −0.01392 (19) | 0.57854 (10) | 0.0421 (4) | |
| H16 | 0.6494 | −0.0358 | 0.5345 | 0.050* | |
| N21 | 0.45947 (6) | 0.60302 (14) | 0.64533 (8) | 0.0326 (3) | |
| H21 | 0.4510 (9) | 0.5932 (19) | 0.6884 (11) | 0.039* | |
| C27 | 0.46800 (7) | 0.72320 (17) | 0.61800 (9) | 0.0314 (3) | |
| O27 | 0.49198 (6) | 0.73798 (13) | 0.56269 (7) | 0.0435 (3) | |
| C21 | 0.44374 (8) | 0.83722 (17) | 0.65374 (9) | 0.0360 (4) | |
| C22 | 0.40355 (9) | 0.8231 (2) | 0.70116 (12) | 0.0497 (5) | |
| H22 | 0.3933 | 0.7395 | 0.7149 | 0.060* | |
| C23 | 0.37867 (11) | 0.9317 (3) | 0.72807 (14) | 0.0642 (6) | |
| H23 | 0.3519 | 0.9210 | 0.7600 | 0.077* | |
| C24 | 0.39294 (12) | 1.0539 (2) | 0.70834 (14) | 0.0676 (7) | |
| H24 | 0.3756 | 1.1267 | 0.7263 | 0.081* | |
| C25 | 0.43304 (14) | 1.0707 (2) | 0.66171 (15) | 0.0737 (7) | |
| H25 | 0.4430 | 1.1548 | 0.6485 | 0.088* | |
| C26 | 0.45857 (11) | 0.9615 (2) | 0.63441 (12) | 0.0551 (5) | |
| H26 | 0.4857 | 0.9727 | 0.6030 | 0.066* | |
| S31 | 0.33408 (2) | 0.61148 (5) | 0.52709 (3) | 0.04314 (14) | |
| C32 | 0.37235 (8) | 0.47716 (18) | 0.50374 (10) | 0.0367 (4) | |
| C33 | 0.33582 (9) | 0.4137 (2) | 0.43779 (12) | 0.0518 (5) | |
| H33 | 0.3482 | 0.3392 | 0.4153 | 0.062* | |
| C34 | 0.27760 (9) | 0.4737 (3) | 0.40789 (12) | 0.0597 (6) | |
| H34 | 0.2473 | 0.4425 | 0.3640 | 0.072* | |
| C35 | 0.27068 (9) | 0.5808 (2) | 0.44974 (12) | 0.0533 (5) | |
| H35 | 0.2353 | 0.6323 | 0.4378 | 0.064* |
| C1 | 0.0294 (8) | 0.0327 (8) | 0.0303 (7) | 0.0004 (6) | 0.0090 (6) | 0.0012 (6) |
| O1 | 0.0340 (6) | 0.0506 (8) | 0.0378 (6) | 0.0050 (5) | 0.0019 (5) | −0.0115 (6) |
| C2 | 0.0310 (8) | 0.0298 (8) | 0.0301 (7) | 0.0047 (6) | 0.0107 (6) | 0.0002 (6) |
| C3 | 0.0330 (8) | 0.0346 (9) | 0.0370 (8) | 0.0039 (7) | 0.0103 (7) | −0.0042 (7) |
| N11 | 0.0316 (7) | 0.0407 (8) | 0.0293 (6) | 0.0108 (6) | 0.0037 (6) | −0.0008 (6) |
| N12 | 0.0307 (7) | 0.0406 (8) | 0.0335 (7) | 0.0096 (6) | 0.0086 (6) | 0.0043 (6) |
| C17 | 0.0346 (8) | 0.0429 (10) | 0.0323 (8) | 0.0077 (7) | 0.0062 (7) | 0.0036 (7) |
| C11 | 0.0338 (8) | 0.0383 (9) | 0.0330 (8) | 0.0069 (7) | 0.0097 (7) | 0.0043 (7) |
| C12 | 0.0378 (9) | 0.0399 (10) | 0.0368 (8) | 0.0055 (7) | 0.0103 (7) | −0.0036 (7) |
| C13 | 0.0332 (8) | 0.0485 (11) | 0.0335 (8) | 0.0033 (8) | 0.0047 (7) | 0.0003 (8) |
| C14 | 0.0337 (8) | 0.0367 (9) | 0.0401 (9) | 0.0080 (7) | 0.0078 (7) | 0.0092 (7) |
| O14 | 0.0425 (7) | 0.0490 (8) | 0.0558 (8) | 0.0182 (6) | −0.0034 (6) | −0.0021 (7) |
| C15 | 0.0417 (10) | 0.0354 (10) | 0.0488 (10) | 0.0076 (8) | 0.0043 (8) | −0.0061 (8) |
| C16 | 0.0360 (9) | 0.0439 (11) | 0.0402 (9) | 0.0058 (8) | 0.0000 (7) | −0.0040 (8) |
| N21 | 0.0376 (7) | 0.0343 (8) | 0.0279 (6) | 0.0073 (6) | 0.0123 (6) | −0.0011 (6) |
| C27 | 0.0296 (8) | 0.0349 (9) | 0.0266 (7) | 0.0033 (6) | 0.0023 (6) | −0.0035 (6) |
| O27 | 0.0537 (8) | 0.0439 (8) | 0.0375 (6) | −0.0012 (6) | 0.0203 (6) | −0.0028 (5) |
| C21 | 0.0363 (9) | 0.0357 (9) | 0.0305 (8) | 0.0061 (7) | −0.0002 (7) | −0.0061 (7) |
| C22 | 0.0499 (11) | 0.0483 (12) | 0.0534 (11) | 0.0079 (9) | 0.0185 (9) | −0.0102 (9) |
| C23 | 0.0613 (14) | 0.0656 (16) | 0.0688 (14) | 0.0177 (12) | 0.0231 (11) | −0.0200 (12) |
| C24 | 0.0798 (17) | 0.0531 (14) | 0.0641 (14) | 0.0248 (12) | 0.0095 (12) | −0.0189 (11) |
| C25 | 0.108 (2) | 0.0359 (12) | 0.0719 (15) | 0.0058 (13) | 0.0156 (15) | −0.0041 (11) |
| C26 | 0.0741 (15) | 0.0385 (11) | 0.0527 (11) | 0.0012 (10) | 0.0175 (11) | −0.0040 (9) |
| S31 | 0.0342 (2) | 0.0489 (3) | 0.0449 (3) | 0.00813 (19) | 0.00828 (18) | −0.0011 (2) |
| C32 | 0.0326 (8) | 0.0431 (10) | 0.0338 (8) | 0.0015 (7) | 0.0080 (7) | −0.0027 (7) |
| C33 | 0.0381 (10) | 0.0649 (14) | 0.0475 (10) | 0.0022 (9) | 0.0034 (8) | −0.0158 (9) |
| C34 | 0.0363 (10) | 0.0921 (18) | 0.0430 (10) | 0.0006 (11) | −0.0025 (8) | −0.0101 (11) |
| C35 | 0.0328 (9) | 0.0762 (15) | 0.0471 (11) | 0.0103 (9) | 0.0047 (8) | 0.0074 (10) |
| C1—O1 | 1.2342 (19) | N21—C27 | 1.346 (2) |
| C1—N11 | 1.340 (2) | N21—H21 | 0.826 (19) |
| C1—C2 | 1.487 (2) | C27—O27 | 1.2322 (19) |
| C2—C3 | 1.341 (2) | C27—C21 | 1.489 (2) |
| C2—N21 | 1.421 (2) | C21—C26 | 1.374 (3) |
| C3—C32 | 1.440 (2) | C21—C22 | 1.387 (3) |
| C3—H3 | 0.9300 | C22—C23 | 1.378 (3) |
| N11—N12 | 1.3844 (18) | C22—H22 | 0.9300 |
| N11—H11 | 0.859 (19) | C23—C24 | 1.353 (4) |
| N12—C17 | 1.275 (2) | C23—H23 | 0.9300 |
| C17—C11 | 1.455 (2) | C24—C25 | 1.378 (4) |
| C17—H17 | 0.9300 | C24—H24 | 0.9300 |
| C11—C16 | 1.388 (2) | C25—C26 | 1.394 (3) |
| C11—C12 | 1.392 (2) | C25—H25 | 0.9300 |
| C12—C13 | 1.378 (2) | C26—H26 | 0.9300 |
| C12—H12 | 0.9300 | S31—C35 | 1.702 (2) |
| C13—C14 | 1.391 (3) | S31—C32 | 1.7235 (18) |
| C13—H13 | 0.9300 | C32—C33 | 1.376 (2) |
| C14—O14 | 1.352 (2) | C33—C34 | 1.411 (3) |
| C14—C15 | 1.381 (2) | C33—H33 | 0.9300 |
| O14—H14 | 0.84 (3) | C34—C35 | 1.343 (3) |
| C15—C16 | 1.379 (2) | C34—H34 | 0.9300 |
| C15—H15 | 0.9300 | C35—H35 | 0.9300 |
| C16—H16 | 0.9300 | ||
| O1—C1—N11 | 123.27 (15) | C27—N21—H21 | 121.3 (14) |
| O1—C1—C2 | 120.61 (15) | C2—N21—H21 | 116.8 (14) |
| N11—C1—C2 | 116.11 (13) | O27—C27—N21 | 121.39 (15) |
| C3—C2—N21 | 120.54 (14) | O27—C27—C21 | 121.18 (16) |
| C3—C2—C1 | 124.32 (15) | N21—C27—C21 | 117.32 (14) |
| N21—C2—C1 | 115.10 (13) | C26—C21—C22 | 118.82 (18) |
| C2—C3—C32 | 129.69 (16) | C26—C21—C27 | 118.41 (17) |
| C2—C3—H3 | 115.2 | C22—C21—C27 | 122.62 (17) |
| C32—C3—H3 | 115.2 | C23—C22—C21 | 120.6 (2) |
| C1—N11—N12 | 120.08 (13) | C23—C22—H22 | 119.7 |
| C1—N11—H11 | 122.5 (13) | C21—C22—H22 | 119.7 |
| N12—N11—H11 | 117.2 (13) | C24—C23—C22 | 120.5 (2) |
| C17—N12—N11 | 113.83 (14) | C24—C23—H23 | 119.8 |
| N12—C17—C11 | 123.09 (15) | C22—C23—H23 | 119.8 |
| N12—C17—H17 | 118.5 | C23—C24—C25 | 120.1 (2) |
| C11—C17—H17 | 118.5 | C23—C24—H24 | 119.9 |
| C16—C11—C12 | 118.20 (15) | C25—C24—H24 | 119.9 |
| C16—C11—C17 | 119.08 (15) | C24—C25—C26 | 119.9 (2) |
| C12—C11—C17 | 122.71 (16) | C24—C25—H25 | 120.1 |
| C13—C12—C11 | 120.66 (17) | C26—C25—H25 | 120.1 |
| C13—C12—H12 | 119.7 | C21—C26—C25 | 120.2 (2) |
| C11—C12—H12 | 119.7 | C21—C26—H26 | 119.9 |
| C12—C13—C14 | 120.29 (16) | C25—C26—H26 | 119.9 |
| C12—C13—H13 | 119.9 | C35—S31—C32 | 91.97 (10) |
| C14—C13—H13 | 119.9 | C33—C32—C3 | 123.35 (17) |
| O14—C14—C15 | 117.42 (17) | C33—C32—S31 | 110.17 (14) |
| O14—C14—C13 | 123.00 (16) | C3—C32—S31 | 126.48 (13) |
| C15—C14—C13 | 119.57 (15) | C32—C33—C34 | 112.82 (19) |
| C14—O14—H14 | 110.1 (19) | C32—C33—H33 | 123.6 |
| C16—C15—C14 | 119.75 (17) | C34—C33—H33 | 123.6 |
| C16—C15—H15 | 120.1 | C35—C34—C33 | 112.70 (18) |
| C14—C15—H15 | 120.1 | C35—C34—H34 | 123.7 |
| C15—C16—C11 | 121.52 (16) | C33—C34—H34 | 123.7 |
| C15—C16—H16 | 119.2 | C34—C35—S31 | 112.35 (15) |
| C11—C16—H16 | 119.2 | C34—C35—H35 | 123.8 |
| C27—N21—C2 | 121.16 (13) | S31—C35—H35 | 123.8 |
| O1—C1—C2—C3 | −166.88 (16) | C2—N21—C27—O27 | −3.6 (2) |
| N11—C1—C2—C3 | 11.8 (2) | C2—N21—C27—C21 | 172.62 (13) |
| O1—C1—C2—N21 | 11.0 (2) | O27—C27—C21—C26 | −11.9 (2) |
| N11—C1—C2—N21 | −170.33 (14) | N21—C27—C21—C26 | 171.89 (16) |
| N21—C2—C3—C32 | 1.0 (3) | O27—C27—C21—C22 | 163.63 (16) |
| C1—C2—C3—C32 | 178.77 (16) | N21—C27—C21—C22 | −12.6 (2) |
| O1—C1—N11—N12 | 1.9 (3) | C26—C21—C22—C23 | 0.3 (3) |
| C2—C1—N11—N12 | −176.74 (14) | C27—C21—C22—C23 | −175.14 (17) |
| C1—N11—N12—C17 | 175.03 (16) | C21—C22—C23—C24 | 0.3 (3) |
| N11—N12—C17—C11 | 179.60 (16) | C22—C23—C24—C25 | −0.6 (4) |
| N12—C17—C11—C16 | 171.54 (17) | C23—C24—C25—C26 | 0.4 (4) |
| N12—C17—C11—C12 | −7.3 (3) | C22—C21—C26—C25 | −0.5 (3) |
| C16—C11—C12—C13 | −1.0 (3) | C27—C21—C26—C25 | 175.14 (18) |
| C17—C11—C12—C13 | 177.86 (16) | C24—C25—C26—C21 | 0.1 (4) |
| C11—C12—C13—C14 | 0.5 (3) | C2—C3—C32—C33 | 178.32 (19) |
| C12—C13—C14—O14 | 178.76 (17) | C2—C3—C32—S31 | −1.3 (3) |
| C12—C13—C14—C15 | 0.1 (3) | C35—S31—C32—C33 | 0.22 (16) |
| O14—C14—C15—C16 | −178.83 (17) | C35—S31—C32—C3 | 179.89 (17) |
| C13—C14—C15—C16 | −0.1 (3) | C3—C32—C33—C34 | 179.77 (18) |
| C14—C15—C16—C11 | −0.5 (3) | S31—C32—C33—C34 | −0.6 (2) |
| C12—C11—C16—C15 | 1.0 (3) | C32—C33—C34—C35 | 0.7 (3) |
| C17—C11—C16—C15 | −177.89 (18) | C33—C34—C35—S31 | −0.5 (3) |
| C3—C2—N21—C27 | −86.1 (2) | C32—S31—C35—C34 | 0.18 (18) |
| C1—C2—N21—C27 | 95.92 (17) |
| H··· | ||||
| N11—H11···O27i | 0.86 (2) | 2.10 (2) | 2.9400 (18) | 168 (2) |
| N21—H21···O1ii | 0.827 (19) | 2.238 (19) | 3.0002 (18) | 153.5 (18) |
| O14—H14···O1iii | 0.84 (3) | 1.97 (3) | 2.7727 (19) | 162 (3) |
| O14—H14···N12iii | 0.84 (3) | 2.59 (3) | 3.133 (2) | 124 (2) |
| C3—H3···O27i | 0.93 | 2.52 | 3.333 (2) | 147 |
| C17—H17···O27i | 0.93 | 2.57 | 3.350 (2) | 142 |
| C24—H24···O14iv | 0.93 | 2.58 | 3.364 (3) | 142 |