Literature DB >> 27534956

How old are bacterial pathogens?

Mark Achtman1.   

Abstract

Only few molecular studies have addressed the age of bacterial pathogens that infected humans before the beginnings of medical bacteriology, but these have provided dramatic insights. The global genetic diversity of Helicobacter pylori, which infects human stomachs, parallels that of its human host. The time to the most recent common ancestor (tMRCA) of these bacteria approximates that of anatomically modern humans, i.e. at least 100 000 years, after calibrating the evolutionary divergence within H. pylori against major ancient human migrations. Similarly, genomic reconstructions of Mycobacterium tuberculosis, the cause of tuberculosis, from ancient skeletons in South America and mummies in Hungary support estimates of less than 6000 years for the tMRCA of M. tuberculosis Finally, modern global patterns of genetic diversity and ancient DNA studies indicate that during the last 5000 years plague caused by Yersinia pestis has spread globally on multiple occasions from China and Central Asia. Such tMRCA estimates provide only lower bounds on the ages of bacterial pathogens, and additional studies are needed for realistic upper bounds on how long humans and animals have suffered from bacterial diseases.
© 2016 The Author(s).

Entities:  

Keywords:  ancient DNA; comparative genomics; gastritis; history of disease; plague; tuberculosis

Mesh:

Substances:

Year:  2016        PMID: 27534956      PMCID: PMC5013766          DOI: 10.1098/rspb.2016.0990

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  57 in total

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Authors:  P Zhu; A van der Ende; D Falush; N Brieske; G Morelli; B Linz; T Popovic; I G Schuurman; R A Adegbola; K Zurth; S Gagneux; A E Platonov; J Y Riou; D A Caugant; P Nicolas; M Achtman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-03       Impact factor: 11.205

2.  Recombination and clonal groupings within Helicobacter pylori from different geographical regions.

Authors:  M Achtman; T Azuma; D E Berg; Y Ito; G Morelli; Z J Pan; S Suerbaum; S A Thompson; A van der Ende; L J van Doorn
Journal:  Mol Microbiol       Date:  1999-05       Impact factor: 3.501

3.  Plague historians in lab coats.

Authors:  Lester K Little
Journal:  Past Present       Date:  2011

4.  Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.

Authors:  Yujun Cui; Chang Yu; Yanfeng Yan; Dongfang Li; Yanjun Li; Thibaut Jombart; Lucy A Weinert; Zuyun Wang; Zhaobiao Guo; Lizhi Xu; Yujiang Zhang; Hancheng Zheng; Nan Qin; Xiao Xiao; Mingshou Wu; Xiaoyi Wang; Dongsheng Zhou; Zhizhen Qi; Zongmin Du; Honglong Wu; Xianwei Yang; Hongzhi Cao; Hu Wang; Jing Wang; Shusen Yao; Alexander Rakin; Yingrui Li; Daniel Falush; Francois Balloux; Mark Achtman; Yajun Song; Jun Wang; Ruifu Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

5.  Silencing urease: a key evolutionary step that facilitated the adaptation of Yersinia pestis to the flea-borne transmission route.

Authors:  Iman Chouikha; B Joseph Hinnebusch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

6.  Evolutionary changes in the genome of Mycobacterium tuberculosis and the human genome from 9000 years BP until modern times.

Authors:  Mark Spigelman; Helen D Donoghue; Ziad Abdeen; Suheir Ereqat; Issa Sarie; Charles L Greenblatt; Ildikó Pap; Ildikó Szikossy; Israel Hershkovitz; Gila Kahila Bar-Gal; Carney Matheson
Journal:  Tuberculosis (Edinb)       Date:  2015-02-13       Impact factor: 3.131

7.  Wet climate and transportation routes accelerate spread of human plague.

Authors:  Lei Xu; Leif Chr Stige; Kyrre Linné Kausrud; Tamara Ben Ari; Shuchun Wang; Xiye Fang; Boris V Schmid; Qiyong Liu; Nils Chr Stenseth; Zhibin Zhang
Journal:  Proc Biol Sci       Date:  2014-02-12       Impact factor: 5.349

8.  Distinct clones of Yersinia pestis caused the black death.

Authors:  Stephanie Haensch; Raffaella Bianucci; Michel Signoli; Minoarisoa Rajerison; Michael Schultz; Sacha Kacki; Marco Vermunt; Darlene A Weston; Derek Hurst; Mark Achtman; Elisabeth Carniel; Barbara Bramanti
Journal:  PLoS Pathog       Date:  2010-10-07       Impact factor: 6.823

9.  Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Authors:  Iñaki Comas; Mireia Coscolla; Tao Luo; Sonia Borrell; Kathryn E Holt; Midori Kato-Maeda; Julian Parkhill; Bijaya Malla; Stefan Berg; Guy Thwaites; Dorothy Yeboah-Manu; Graham Bothamley; Jian Mei; Lanhai Wei; Stephen Bentley; Simon R Harris; Stefan Niemann; Roland Diel; Abraham Aseffa; Qian Gao; Douglas Young; Sebastien Gagneux
Journal:  Nat Genet       Date:  2013-09-01       Impact factor: 38.330

10.  Genotyping Yersinia pestis in Historical Plague: Evidence for Long-Term Persistence of Y. pestis in Europe from the 14th to the 17th Century.

Authors:  Lisa Seifert; Ingrid Wiechmann; Michaela Harbeck; Astrid Thomas; Gisela Grupe; Michaela Projahn; Holger C Scholz; Julia M Riehm
Journal:  PLoS One       Date:  2016-01-13       Impact factor: 3.240

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  14 in total

1.  The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity.

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Review 2.  The Role of aDNA in Understanding the Coevolutionary Patterns of Human Sexually Transmitted Infections.

Authors:  Ville N Pimenoff; Charlotte J Houldcroft; Riaan F Rifkin; Simon Underdown
Journal:  Genes (Basel)       Date:  2018-06-25       Impact factor: 4.096

Review 3.  Ancient oncogenesis, infection and human evolution.

Authors:  Riaan F Rifkin; Marnie Potgieter; Jean-Baptiste Ramond; Don A Cowan
Journal:  Evol Appl       Date:  2017-07-11       Impact factor: 5.183

4.  Ancient familial Mediterranean fever mutations in human pyrin and resistance to Yersinia pestis.

Authors:  Yong Hwan Park; Elaine F Remmers; Wonyong Lee; Amanda K Ombrello; Lawton K Chung; Zhao Shilei; Deborah L Stone; Maya I Ivanov; Nicole A Loeven; Karyl S Barron; Patrycja Hoffmann; Michele Nehrebecky; Yeliz Z Akkaya-Ulum; Erdal Sag; Banu Balci-Peynircioglu; Ivona Aksentijevich; Ahmet Gül; Charles N Rotimi; Hua Chen; James B Bliska; Seza Ozen; Daniel L Kastner; Daniel Shriner; Jae Jin Chae
Journal:  Nat Immunol       Date:  2020-06-29       Impact factor: 25.606

5.  Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.

Authors:  Lei Xu; Leif C Stige; Herwig Leirs; Simon Neerinckx; Kenneth L Gage; Ruifu Yang; Qiyong Liu; Barbara Bramanti; Katharine R Dean; Hui Tang; Zhe Sun; Nils Chr Stenseth; Zhibin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-28       Impact factor: 11.205

6.  THE EXPOSOME IN HUMAN EVOLUTION: FROM DUST TO DIESEL.

Authors:  Benjamin C Trumble; Caleb E Finch
Journal:  Q Rev Biol       Date:  2019-12       Impact factor: 6.750

7.  Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.

Authors:  Zhemin Zhou; Inge Lundstrøm; Alicia Tran-Dien; Sebastián Duchêne; Nabil-Fareed Alikhan; Martin J Sergeant; Gemma Langridge; Anna K Fotakis; Satheesh Nair; Hans K Stenøien; Stian S Hamre; Sherwood Casjens; Axel Christophersen; Christopher Quince; Nicholas R Thomson; François-Xavier Weill; Simon Y W Ho; M Thomas P Gilbert; Mark Achtman
Journal:  Curr Biol       Date:  2018-07-19       Impact factor: 10.834

Review 8.  Yersinia pestis Plasminogen Activator.

Authors:  Florent Sebbane; Vladimir N Uversky; Andrey P Anisimov
Journal:  Biomolecules       Date:  2020-11-14

9.  A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex.

Authors:  Susanna Sabin; Alexander Herbig; Åshild J Vågene; Torbjörn Ahlström; Gracijela Bozovic; Caroline Arcini; Denise Kühnert; Kirsten I Bos
Journal:  Genome Biol       Date:  2020-08-10       Impact factor: 13.583

Review 10.  The Recovery, Interpretation and Use of Ancient Pathogen Genomes.

Authors:  Sebastián Duchêne; Simon Y W Ho; Ann G Carmichael; Edward C Holmes; Hendrik Poinar
Journal:  Curr Biol       Date:  2020-10-05       Impact factor: 10.834

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