Literature DB >> 27531617

Is the manifestation of the local dynamics in the spin-lattice NMR relaxation in dendrimers sensitive to excluded volume interactions?

Oleg V Shavykin1, Igor M Neelov, Anatolii A Darinskii.   

Abstract

The effect of excluded volume (EV) interactions on the manifestation of the local dynamics in the spin-lattice NMR relaxation in dendrimers has been studied by using Brownian dynamics simulations. The study was motivated by the theory developed by Markelov et al., [J. Chem. Phys., 2014, 140, 244904] for a Gaussian dendrimer model without EV interactions. The theory connects the experimentally observed dependence of the spin-lattice relaxation rate 1/T(1)H on the location of NMR active groups with the restricted flexibility (semiflexibility) of dendrimers. Semiflexibility was introduced through the correlations between the orientations of different segments. However, these correlations exist even in flexible dendrimer models with EV interactions. We have simulated coarse-grained flexible and semiflexible dendrimer models with and without EV interactions. Every dendrimer segment consisted of two rigid bonds. Semiflexibility was introduced through a potential which restricts the fluctuations of angles between neighboring bonds but does not change orientational correlations in the EV model as compared to the flexible case. The frequency dependence of the reduced 1/T(1)H(ωH) for segments and bonds belonging to different dendrimer shells was calculated. It was shown that the main effect of EV interactions consists of a much stronger contribution of the overall dendrimer rotation to the dynamics of dendrimer segments as compared to phantom models. After the exclusion of this contribution the manifestation of internal dynamics in spin-lattice NMR relaxation appears to be practically insensitive to EV interactions. For the flexible models, the position ωmax of the peak of the modified 1/T(1)H(ωH) does not depend on the shell number. For semiflexible models, the maximum of 1/T(1)H(ωH) for internal segments or bonds shifts to lower frequencies as compared to outer ones. The dependence of ωmax on the number of dendrimer shells appears to be universal for segments and bonds in dendrimer models with and without EV interactions.

Entities:  

Year:  2016        PMID: 27531617     DOI: 10.1039/c6cp01520d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Poly(lysine) Dendrimers Form Complexes with siRNA and Provide Its Efficient Uptake by Myeloid Cells: Model Studies for Therapeutic Nucleic Acid Delivery.

Authors:  Michał Gorzkiewicz; Olga Kopeć; Anna Janaszewska; Małgorzata Konopka; Elżbieta Pędziwiatr-Werbicka; Irina I Tarasenko; Valeriy V Bezrodnyi; Igor M Neelov; Barbara Klajnert-Maculewicz
Journal:  Int J Mol Sci       Date:  2020-04-29       Impact factor: 5.923

2.  Comparison of Structure and Local Dynamics of Two Peptide Dendrimers with the Same Backbone but with Different Side Groups in Their Spacers.

Authors:  Sofia E Mikhtaniuk; Valeriy V Bezrodnyi; Oleg V Shavykin; Igor M Neelov; Nadezhda N Sheveleva; Anastasia V Penkova; Denis A Markelov
Journal:  Polymers (Basel)       Date:  2020-07-25       Impact factor: 4.329

3.  Why the Orientational Mobility in Arginine and Lysine Spacers of Peptide Dendrimers Designed for Gene Delivery Is Different?

Authors:  Valeriy V Bezrodnyi; Oleg V Shavykin; Sofia E Mikhtaniuk; Igor M Neelov; Nadezhda N Sheveleva; Denis A Markelov
Journal:  Int J Mol Sci       Date:  2020-12-21       Impact factor: 5.923

4.  Size and Structure of Empty and Filled Nanocontainer Based on Peptide Dendrimer with Histidine Spacers at Different pH.

Authors:  Valeriy V Bezrodnyi; Sofia E Mikhtaniuk; Oleg V Shavykin; Igor M Neelov; Nadezhda N Sheveleva; Denis A Markelov
Journal:  Molecules       Date:  2021-10-29       Impact factor: 4.411

5.  Lysine-based dendrimer with double arginine residues.

Authors:  Nadezhda N Sheveleva; Denis A Markelov; Mikhail A Vovk; Mariya E Mikhailova; Irina I Tarasenko; Peter M Tolstoy; Igor M Neelov; Erkki Lähderanta
Journal:  RSC Adv       Date:  2019-06-07       Impact factor: 4.036

6.  NMR studies of excluded volume interactions in peptide dendrimers.

Authors:  Nadezhda N Sheveleva; Denis A Markelov; Mikhail A Vovk; Maria E Mikhailova; Irina I Tarasenko; Igor M Neelov; Erkki Lähderanta
Journal:  Sci Rep       Date:  2018-06-11       Impact factor: 4.379

7.  Lysine Dendrigraft Nanocontainers. Influence of Topology on Their Size and Internal Structure.

Authors:  Boris Okrugin; Maxim Ilyash; Denis Markelov; Igor Neelov
Journal:  Pharmaceutics       Date:  2018-08-13       Impact factor: 6.321

  7 in total

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