| Literature DB >> 27530161 |
Cornelia Braicu1,2, Roxana Cojocneanu-Petric3, Ancuta Jurj3, Diana Gulei4, Ionelia Taranu5, Alexandru Mihail Gras5, Daniela Eliza Marin5, Ioana Berindan-Neagoe6,7,8.
Abstract
BACKGROUND: Zearalenone (ZEA) is a secondary metabolite produced by Fusarium species. ZEA was proved to exert a wide range of unwanted side effects, but its mechanism of action, particularly at duodenum levels, remains unclear. In our study based on the microarray technology we assessed the alteration of gene expression pattern Sus scrofa duodenum which has been previously exposed to ZEA. Gene expression data was validated by qRT-PCR and ELISA. The gene expression data were further extrapolated the results to their human orthologues and analyzed the data in the context of human health using IPA (Ingenuity Pathways Analysis).Entities:
Keywords: Duodenum; Extrapolation to human; Health; Microarray; Sus scrofa; Zearalenone
Mesh:
Substances:
Year: 2016 PMID: 27530161 PMCID: PMC4987992 DOI: 10.1186/s12864-016-2984-8
Source DB: PubMed Journal: BMC Genomics ISSN: 1471-2164 Impact factor: 3.969
Fig. 1qRT-PCR data validation of the microarray data
Fig. 2Protein expression quantification by ELISA at duodenum level for IL-1B, IL-8 and IL-4 for the control group and the group exposed to ZEA
Top 4 canonical pathway targeted by ZEA at duodenum level
| Canonical pathway |
| Overlap | |
|---|---|---|---|
| 1 | TREM1 Signaling | 1.45E-06 | 26.7 % 20/75 |
| Dopamine-DARPP32 Feedback in cAMP Signaling | 5.22E-06 | 19.3 % 31/161 | |
| 2 | Cancer Regulation by Stathmin1 | 4.29E-06 | 18.3 % 35/191 |
| 3 | Role of Macrophages, Fibroblasts and Endothelial Cells in Rheumatoid Arthritis | 1.81E-08 | 18.1 % 54/298 |
| 4 | Protein Kinase A Signaling | 1.63E-06 | 15.3 % 59/385 |
Fig. 3Gene network interaction generated using IPA, as response to ZEA exposure at duodenul level, as key central molecule is FOS, being relate to oxidative stress response and TGFB1 pathways. The altered expressed genes are displayed in red and green, based on fold change expression level, meanwhile the gene in grey are retrieved in literature to interact
Top disease and function altered as response to ZEA exposure
| ID | Top diseases and functions | Score | Focus molecules |
|---|---|---|---|
| 1 | Cell Morphology, Cellular Assembly and Organization, Cellular Function and Maintenance | 40 | 34 |
| 2 | Metabolic Disease, Neurological Disease, Organismal Injury and Abnormalities | 38 | 33 |
| 3 | Auditory Disease, Hereditary Disorder, Neurological Disease | 38 | 33 |
| 4 | Molecular Transport, Hereditary Disorder, Connective Tissue Disorders | 35 | 32 |
| 5 | Digestive System Development and Function, Endocrine System Development and Function, Organ Morphology | 31 | 30 |
| 6 | Cellular Movement, Cell-To-Cell Signalling and Interaction, Nervous System Development and Function | 31 | 30 |
| 7 | Cancer, Cell Death and Survival, Organismal Injury and Abnormalities | 31 | 30 |
| 8 | Gene Expression, Protein Synthesis, RNA Post-Transcriptional Modification | 29 | 29 |
| 9 | Cell Death and Survival, Cell Morphology, Infectious Disease | 29 | 29 |
| 10 | Cardiovascular System Development and Function, Cancer, Cardiovascular Disease | 29 | 29 |
| 11 | Connective Tissue Disorders, Immunological Disease, Inflammatory Disease | 28 | 28 |
| 12 | Tissue Development, Post-Translational Modification, Cell Cycle | 28 | 28 |
| 13 | Cell Cycle, DNA Replication, Recombination, and Repair, Cellular Compromise | 26 | 27 |
| 14 | Nucleic Acid Metabolism, Small Molecule Biochemistry, Cell Cycle | 26 | 27 |
| 15 | DNA Replication, Recombination, and Repair, Cell Cycle, Reproductive System Development and Function | 26 | 27 |
| 16 | Cellular Growth and Proliferation, Embryonic Development, Organ Development | 26 | 27 |
| 17 | RNA Post-Transcriptional Modification, Developmental Disorder, Hereditary Disorder | 26 | 27 |
| 18 | Developmental Disorder, Hereditary Disorder, Skeletal and Muscular Disorders | 26 | 27 |
| 19 | Protein Synthesis, Cancer, Organismal Injury and Abnormalities | 26 | 27 |
| 20 | Energy Production, Lipid Metabolism, Small Molecule Biochemistry | 26 | 27 |
| 21 | Cellular Assembly and Organization, Inflammatory Disease, Inflammatory Response | 24 | 26 |
| 22 | Lipid Metabolism, Molecular Transport, Small Molecule Biochemistry | 24 | 26 |
| 23 | RNA Post-Transcriptional Modification, Carbohydrate Metabolism, Cellular Compromise | 24 | 26 |
| 24 | Amino Acid Metabolism, Small Molecule Biochemistry, Cell Signaling | 24 | 26 |
| 25 | Infectious Disease, Organismal Injury and Abnormalities, Dermatological Diseases and Conditions | 24 | 26 |
Fig. 4Gene network interaction generated using IPA, as response to ZEA exposure at duodenum level, as key central molecule is RB, being relate to alteration of the cell cycle or NFkB pathways. The altered expressed genes are displayed in red and green, based on fold change expression level, meanwhile the gene in grey are retrieved in literature to interact
qPCR primer sequences and characteristics
| Gene | Accesion no. | Primer source | Primer sequence (5′ → 3′) | Orientation | Tm (°C) | Amplicon lenght (bp) | References |
|---|---|---|---|---|---|---|---|
| TNF-α | NM_214022 | Pig | ACTGCACTTCGAGGTTATCGG | forward | 60 | 118 | [ |
| GGCGACGGGCTTATCTGA | reverse | 60 | |||||
| IL-8 | NM_213867.1 | Pig | GCTCTCTGTGAGGCTGCAGTTC | forward | 58 | 79 | [ |
| AAGGTGTGGAATGCGTATTTATGC | reverse | 54 | |||||
| IL-6 | NM_214399 | Pig | GGCAAAAGGGAAAGAATCCAG | forward | 57 | 87 | [ |
| CGTTCTGTGACTGCAGCTTATCC | reverse | 61 | |||||
| IL-1β | NM_214055 | Pig | ATGCTGAAGGCTCTCCACCTC | forward | 62 | 89 | [ |
| TTGTTGCTATCATCTCCTTGCAC | reverse | 59 | |||||
| IL-10 | NM_214041.1 | Pig | GGCCCAGTGAAGAGTTTCTTTC | forward | 54 | 51 | [ |
| CAACAAGTCGCCCATCTGGT | reverse | 55 | |||||
| NFkB1 | NM_001048232.1 | Pig | TCGCTGCCAAAGAAGGACAT | forward | 54 | 101 | [ |
| AGCGTTCAGACCTTCACCGT | |||||||
| GAPDH | NM_001206359.1 | Pig | ACTCACTCTTCTACCTTTGATGCT | forward | 49 | 100 | [ |
| TGTTGCTGTAGCCAAATTCA | reverse | 56 | |||||
| B-actina | NM_213978.1 | Pig | GGACTTCGAGCAGGAGATGG | forward | 60 | 230 | [ |
| GCACCGTGTTTGCGTAGAGG | reverse | 62 |