Literature DB >> 27528752

Functional interactions between polypyrimidine tract binding protein and PRI peptide ligand containing proteins.

Miguel B Coelho1, David B Ascher1, Clare Gooding1, Emma Lang1, Hannah Maude1, David Turner1, Miriam Llorian1, Douglas E V Pires2, Jan Attig3, Christopher W J Smith4.   

Abstract

Polypyrimidine tract binding protein (PTBP1) is a heterogeneous nuclear ribonucleoprotein (hnRNP) that plays roles in most stages of the life-cycle of pre-mRNA and mRNAs in the nucleus and cytoplasm. PTBP1 has four RNA binding domains of the RNA recognition motif (RRM) family, each of which can bind to pyrimidine motifs. In addition, RRM2 can interact via its dorsal surface with proteins containing short peptide ligands known as PTB RRM2 interacting (PRI) motifs, originally found in the protein Raver1. Here we review our recent progress in understanding the interactions of PTB with RNA and with various proteins containing PRI ligands.
© 2016 The Author(s). published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  Matrin3; PTB; RNA; alternative splicing; heterogeneous nuclear ribonucleoprotein (hnRNP); polypyrimidine tract binding protein

Mesh:

Substances:

Year:  2016        PMID: 27528752     DOI: 10.1042/BST20160080

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  9 in total

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Authors:  Yoochan Myung; Douglas E V Pires; David B Ascher
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

2.  MicroRNA‑133b alleviates doxorubicin‑induced cardiomyocyte apoptosis and cardiac fibrosis by targeting PTBP1 and TAGLN2.

Authors:  Zhen Li; Zekang Ye; Jiazheng Ma; Qian Gu; Jianzhen Teng; Xiaoxuan Gong
Journal:  Int J Mol Med       Date:  2021-05-13       Impact factor: 4.101

Review 3.  Genomes, structural biology and drug discovery: combating the impacts of mutations in genetic disease and antibiotic resistance.

Authors:  Arun Prasad Pandurangan; David B Ascher; Sherine E Thomas; Tom L Blundell
Journal:  Biochem Soc Trans       Date:  2017-04-15       Impact factor: 5.407

4.  PTBP1-Mediated Alternative Splicing Regulates the Inflammatory Secretome and the Pro-tumorigenic Effects of Senescent Cells.

Authors:  Athena Georgilis; Sabrina Klotz; Christopher J Hanley; Nicolas Herranz; Benedikt Weirich; Beatriz Morancho; Ana Carolina Leote; Luana D'Artista; Suchira Gallage; Marco Seehawer; Thomas Carroll; Gopuraja Dharmalingam; Keng Boon Wee; Marco Mellone; Joaquim Pombo; Danijela Heide; Ernesto Guccione; Joaquín Arribas; Nuno L Barbosa-Morais; Mathias Heikenwalder; Gareth J Thomas; Lars Zender; Jesús Gil
Journal:  Cancer Cell       Date:  2018-07-09       Impact factor: 31.743

5.  MTR4 drives liver tumorigenesis by promoting cancer metabolic switch through alternative splicing.

Authors:  Lili Yu; Jinchul Kim; Lei Jiang; Bingbing Feng; Yue Ying; Kai-Yuan Ji; Qingshuang Tang; Wancheng Chen; Taoyi Mai; Wenlong Dou; Jianlong Zhou; Le-Yang Xiang; Yang-Fan He; Dinghua Yang; Qingjiao Li; Xuemei Fu; Yang Xu
Journal:  Nat Commun       Date:  2020-02-05       Impact factor: 14.919

6.  Intronic Determinants Coordinate Charme lncRNA Nuclear Activity through the Interaction with MATR3 and PTBP1.

Authors:  Fabio Desideri; Andrea Cipriano; Silvia Petrezselyova; Giulia Buonaiuto; Tiziana Santini; Petr Kasparek; Jan Prochazka; Giacomo Janson; Alessandro Paiardini; Alessandro Calicchio; Alessio Colantoni; Radislav Sedlacek; Irene Bozzoni; Monica Ballarino
Journal:  Cell Rep       Date:  2020-12-22       Impact factor: 9.423

7.  DynaMut2: Assessing changes in stability and flexibility upon single and multiple point missense mutations.

Authors:  Carlos H M Rodrigues; Douglas E V Pires; David B Ascher
Journal:  Protein Sci       Date:  2020-09-11       Impact factor: 6.725

8.  The Presence, Persistence and Functional Properties of Plasmodium vivax Duffy Binding Protein II Antibodies Are Influenced by HLA Class II Allelic Variants.

Authors:  Flora S Kano; Flávia A Souza-Silva; Leticia M Torres; Barbara A S Lima; Taís N Sousa; Jéssica R S Alves; Roberto S Rocha; Cor J F Fontes; Bruno A M Sanchez; John H Adams; Cristiana F A Brito; Douglas E V Pires; David B Ascher; Ana Maria Sell; Luzia H Carvalho
Journal:  PLoS Negl Trop Dis       Date:  2016-12-13

9.  Identification and validation of pivotal genes related to age-related meniscus degeneration based on gene expression profiling analysis and in vivo and in vitro models detection.

Authors:  Ming Chen; Siqi Zhou; Huasong Shi; Hanwen Gu; Yinxian Wen; Liaobin Chen
Journal:  BMC Med Genomics       Date:  2021-09-29       Impact factor: 3.063

  9 in total

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