| Literature DB >> 27524866 |
KarryAnne K Belanger1, Bill T Ameredes2, Istvan Boldogh3, Leopoldo Aguilera-Aguirre4.
Abstract
Asthma is characterized by reversible airway narrowing, shortness of breath, wheezing, coughing, and other symptoms driven by chronic inflammatory processes, commonly triggered by allergens. In 90% of asthmatics, most of these symptoms can also be triggered by intense physical activities and severely exacerbated by environmental factors. This condition is known as exercise-induced asthma (EIA). Current theories explaining EIA pathogenesis involve osmotic and/or thermal alterations in the airways caused by changes in respiratory airflow during exercise. These changes, along with existing airway inflammatory conditions, are associated with increased cellular levels of reactive oxygen species (ROS) affecting important biomolecules including DNA, although the underlying molecular mechanisms have not been completely elucidated. One of the most abundant oxidative DNA lesions is 8-oxoguanine (8-oxoG), which is repaired by 8-oxoguanine DNA glycosylase 1 (OGG1) during the base excision repair (BER) pathway. Whole-genome expression analyses suggest a cellular response to OGG1-BER, involving genes that may have a role in the pathophysiology of EIA leading to mast cell degranulation, airway hyperresponsiveness, and bronchoconstriction. Accordingly, this review discusses a potential new hypothesis in which OGG1-BER-induced gene expression is associated with EIA symptoms.Entities:
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Year: 2016 PMID: 27524866 PMCID: PMC4976190 DOI: 10.1155/2016/3762561
Source DB: PubMed Journal: Mediators Inflamm ISSN: 0962-9351 Impact factor: 4.711
OGG1-BER induced expression of genes involved in mast cell degranulation.
| Symbol | Name | GenBank/RefSeq ID | SC (fold) | MC (fold) |
|---|---|---|---|---|
|
| Integrin alpha 6 | NM_008397 | −1.28 | 29.12 |
|
| Forkhead box F1 | NM_010426 | 1.63 | 18.98 |
|
| Phospholipase C, gamma 1 | NM_021280 | 1.15 | 17.11 |
|
| Albumin | NM_009654 | −1.74 | 15.28 |
|
| Phospholipase A2, group III | NM_172791 | −7.06 | 9.71 |
|
| Androgen receptor | NM_013476 | −2.16 | 9.58 |
|
| Chemokine (C-X-C motif) ligand 9 | NM_008599 | −1.51 | 9.09 |
|
| Membrane-spanning 4-domains, subfamily A, member 2 | NM_013516 | 1.33 | 8.38 |
|
| Tumor necrosis factor | NM_013693 | 16.65 | 7.13 |
|
| NFKLPa gene enhancer in B cells inhibitor, alpha | NM_010907 | 4.73 | 4.41 |
|
| GRB2b-related adaptor protein 2 | NM_010815 | 1.18 | 3.53 |
|
| Interleukin 2 inducible T cell kinase | NM_010583 | 1.38 | 3.34 |
|
| Tumor necrosis factor receptor-associated factor 6 | NM_009424 | 1.09 | 2.94 |
|
| Chemokine (C-C motif) ligand 11 | NM_011330 | −1.71 | 2.93 |
|
| 3-phosphoinositide dependent protein kinase 1 | NM_011062 | −1.22 | 2.73 |
|
| Phosphoinositide-3-kinase, catalytic, gamma polypeptide | NM_020272 | 1.02 | 2.67 |
|
| RASc guanyl releasing protein 1 | NM_011246 | 1.21 | 2.62 |
|
| Interleukin 1 receptor, type I | NM_008362 | 1.24 | 2.55 |
|
| Phospholipase D1 | NM_008875 | 1.02 | 2.49 |
|
| Heme oxygenase 1 | NM_010442 | −1.43 | 2.46 |
|
| Phosphatidylinositol 3-kinase, catalytic, beta polypeptide | NM_029094 | −1.02 | 2.34 |
|
| Fer (fms/fps related) protein kinase | NM_008000 | −1.60 | 2.33 |
|
| Ubiquitin associated and SH3 domain containing, B | NM_176860 | 1.12 | 2.25 |
|
| Kit oncogene | NM_021099 | 1.39 | 2.20 |
|
| Glycoprotein 1b, alpha polypeptide | NM_010326 | 1.28 | 2.16 |
|
| Histamine receptor H1 | NM_008285 | −2.85 | 2.15 |
|
| Fyn proto-oncogene | NM_008054 | 1.21 | 2.14 |
|
| Phospholipase C, gamma 2 | NM_172285 | 1.08 | 2.12 |
|
| Elastase, neutrophil expressed | NM_015779 | −1.43 | 2.09 |
|
| Growth factor receptor bound protein 2-associated protein 2 | NM_010248 | 1.15 | 2.09 |
SC, single 8-oxoG challenge; MC, multiple 8-oxoG challenge; NFKLPa, nuclear factor of kappa light polypeptide; GRB2b, growth factor receptor-bound protein 2. RASc, rat sarcoma. The table shows the top ranked genes (MC, 60 min) by expression level (≥2-fold).
Figure 1Comparative gene expression between 8-oxoG challenged- and intensive exercise-exposed airways. The clustered heat map was constructed using the list of the most upregulated genes in airway epithelial cells from EIB positive (EIB+) individuals after 30 minutes of intensive exercise, as described in Hallstrand et al. [22]. This list of genes was compared to a list of the same genes from lungs challenged once (SC) or multiple times (MC). Top ranked gene list was obtained using Gene Expression Omnibus (GEO)'s built-in application GEO2R (http://www.ncbi.nlm.nih.gov/geo/geo2r/) and Hallstrand et al. GEO deposited dataset (GSE13785). Hierarchically clustered heat map was generated using GENE-E (Broad Institute, http://www.broadinstitute.org/).
Figure 2OGG1-BER induced gene expression associated to airway mast cell degranulation. Mouse lungs received a single challenge (SC) or multiple challenges (MC) with 8-oxoG. Lungs were collected at 30 and 60 min after challenge and analyzed at whole-transcriptome level by RNA-Seq. (a) Hierarchically clustered heat map was generated using GENE-E online software (Broad Institute, http://www.broadinstitute.org/) considering transcript levels (fold-change). Red represents upregulation and blue represents downregulation. (b) Enrichment interaction network of the known and predicted interactions among the set associated with mast cell degranulation and OGG1. Peripheral nodes represent genes with a direct interaction with OGG1. The modified network was generated with GeneMania online database (http://www.genemania.org/).
Figure 3OGG1-BER induced gene expression associated with AHR. Mouse lungs received a single challenge (SC) or multiple challenges (MC) of 8-oxoG and were processed as previously described above. (a) Hierarchically clustered heat map was generated using GENE-E online software (Broad Institute, http://www.broadinstitute.org/) considering transcript levels (fold-change). Red represents upregulation and blue represents downregulation. (b) Enrichment network of the known and predicted interactions among the set of genes associated to airway hyperresponsiveness and OGG1. Peripheral nodes represent genes with a direct interaction with OGG1. The modified network was generated with GeneMania online database (http://www.genemania.org/).
OGG1-BER induced expression of genes associated to AHR.
| Symbol | Name | GenBank/RefSeq ID | SC (fold) | MC (fold) |
|---|---|---|---|---|
|
| Chemokine (C-X-C motif) ligand 2 | NM_009140 | 192.95 | 48.55 |
|
| Bradykinin receptor, beta 2 | NM_009747 | −1.35 | 45.16 |
|
| Interleukin 10 | NM_010548 | 5.84 | 33.51 |
|
| Toll-like receptor 9 | NM_031178 | −1.54 | 25.97 |
|
| Arginase, liver | NM_007482 | −5.00 | 17.71 |
|
| Chemokine (C-X-C motif) ligand 1 | NM_008176 | 54.45 | 15.94 |
|
| Estrogen receptor 1 (alpha) | NM_007956 | −5.19 | 15.56 |
|
| Albumin | NM_009654 | −1.74 | 15.28 |
|
| Cholinergic receptor, muscarinic 3, cardiac | NM_033269 | 1.66 | 9.99 |
|
| Fms-like tyrosine kinase 1 | NM_010228 | −1.13 | 9.06 |
|
| Cholinergic receptor, muscarinic 2, cardiac | NM_203491 | −1.79 | 8.73 |
|
| Vasoactive intestinal polypeptide | NM_011702 | −2.10 | 7.26 |
|
| Tumor necrosis factor | NM_013693 | 16.65 | 7.13 |
|
| Collagen, type IV, alpha 3 | NM_007734 | 1.15 | 6.74 |
|
| Tachykinin 1 | NM_009311 | −4.28 | 6.70 |
|
| Myosin light chain kinase 3 | NM_175441 | −4.08 | 6.35 |
|
| Protein phosphatase 1, regulatory (inhib) subunit 12A | NM_027892 | −1.08 | 6.06 |
|
| Cytotoxic T-lymphocyte-associated protein 4 | NM_009843 | 7.08 | 5.82 |
|
| Mucosal vascular addressin cell adhesion molecule 1 | NM_013591 | −1.63 | 5.66 |
|
| Interleukin 1 alpha | NM_010554 | 4.17 | 5.55 |
|
| Agmatine ureohydrolase (agmatinase) | NM_001081408 | −4.28 | 5.03 |
|
| Interleukin 1 receptor antagonist | NM_031167 | 1.92 | 4.10 |
|
| Interleukin 2 receptor, beta chain | NM_008368 | 1.31 | 4.04 |
|
| Interleukin 9 receptor | NM_008374 | 1.08 | 3.96 |
|
| Endothelin 1 | NM_010104 | 3.10 | 3.81 |
|
| Proteoglycan 2, bone marrow | NM_008920 | 2.21 | 3.72 |
|
| Membrane metallo-endopeptidase | NM_008604 | −1.07 | 3.66 |
|
| Cathepsin G | NM_007800 | −1.14 | 3.35 |
|
| IL2 inducible T cell kinase | NM_010583 | 1.38 | 3.34 |
|
| PI3Ka, regulatory subunit, polypeptide 1 (p85 alpha) | NM_001024955 | −1.18 | 3.24 |
|
| Myeloperoxidase | NM_010824 | 1.36 | 3.24 |
|
| Nerve growth factor receptor | NM_033217 | −1.88 | 3.20 |
|
| Solute carrier family 7, member 1 | NM_007513 | −1.28 | 3.19 |
|
| Phosphodiesterase 4D, cAMP specific | NM_011056 | 1.08 | 3.18 |
|
| Phosphodiesterase 4B, cAMP specific | NM_019840 | 1.39 | 3.17 |
|
| Epidermal growth factor receptor | NM_007912 | −1.16 | 3.05 |
|
| C-abl oncogene 1, non-receptor tyrosine kinase | NM_001112703 | 1.11 | 3.01 |
|
| Ets variant 6 | NM_007961 | −1.05 | 2.98 |
|
| Tachykinin receptor 2 | NM_009314 | −1.07 | 2.93 |
|
| Chemokine (C-C motif) ligand 11 | NM_011330 | −1.71 | 2.93 |
|
| Transcription termination factor, RNA polymerase II | NM_001013026 | 1.06 | 2.92 |
|
| Interleukin 6 | NM_031168 | 10.44 | 2.75 |
|
| Phosphodiesterase 3B, cGMP-inhibited | NM_011055 | −1.79 | 2.68 |
|
| Protocadherin 1 | NM_029357 | −1.12 | 2.66 |
|
| Jun proto-oncogene | NM_010591 | 1.38 | 2.55 |
|
| NAD(P)Hb dehydrogenase, quinone 1 | NM_008706 | −2.58 | 2.54 |
|
| Interleukin 1 beta | NM_008361 | 4.15 | 2.52 |
|
| Cholecystokinin | NM_031161 | −1.43 | 2.51 |
|
| Coagulation factor II (thrombin) receptor-like 1 | NM_007974 | 1.09 | 2.51 |
|
| Myelin basic protein | NM_010777 | −1.40 | 2.48 |
|
| Integrin alpha 4 | NM_010576 | 1.26 | 2.46 |
|
| Coagulation factor II (thrombin) receptor | NM_010169 | 1.46 | 2.39 |
|
| Selectin, platelet | NM_011347 | −1.31 | 2.39 |
|
| Interleukin 2 receptor, alpha chain | NM_008367 | 1.06 | 2.34 |
|
| Angiotensin II receptor, type 1a | NM_177322 | 1.72 | 2.33 |
|
| Fibroblast growth factor receptor 1 | NM_010206 | 1.02 | 2.32 |
|
| Myosin, light polypeptide kinase | NM_139300 | 1.24 | 2.30 |
|
| Kruppel-like factor 15 | NM_023184 | 1.41 | 2.30 |
|
| Leukotriene B4 receptor 2 | NM_020490 | −7.37 | 2.15 |
|
| Histamine receptor H1 | NM_008285 | −2.85 | 2.15 |
|
| Interleukin 5 | NM_010558 | −1.87 | 2.14 |
|
| Intercellular adhesion molecule 1 | NM_010493 | 1.30 | 2.12 |
|
| Interleukin-1 receptor-associated kinase 3 | NM_028679 | −1.19 | 2.12 |
|
| Cystic fibrosis transmembrane conductance regulator | NM_021050 | 1.09 | 2.11 |
|
| Elastase, neutrophil expressed | NM_015779 | −1.43 | 2.09 |
|
| Heat shock protein 1 (chaperonin) | NM_010477 | −2.07 | 2.06 |
SC, single 8-oxoG challenge; MC, multiple 8-oxoG challenge; PI3Ka, phosphatidylinositol 3-kinase; NAD(P)Hb, dihydronicotinamide-adenine dinucleotide phosphate. The table shows the top ranked genes (MC, 60 min) by expression level (≥2-fold).
Figure 4Proposed role for OGG1-BER in asthma and EIA-related gene expression. The large inhaled air volumes during physical activity decrease the temperature and water content of the airway epithelium lining fluid, leading to supraphysiological ROS production by epithelial cells, which can be exacerbated by exposures to environmental pollutants. ROS-induced 8-oxoG lesions in the DNA are repaired by OGG1-BER. In the cytosol, 8-oxoG complexes with OGG1 and acts as a guanine nucleotide exchange factor (GEF), activating small GTPases and initiating a signaling cascade that leads to the translocation of transcription factors (TFs) initiating the transcription of genes associated to AHR, mast cell degranulation, and bronchoconstriction.