| Literature DB >> 27523597 |
Hannah Kennedy1, Tobias B Haack2, Verity Hartill3, Lavinija Mataković4, E Regula Baumgartner5, Howard Potter6, Richard Mackay6, Charlotte L Alston7, Siobhan O'Sullivan8, Robert McFarland7, Grainne Connolly9, Caroline Gannon10, Richard King6, Scott Mead6, Ian Crozier11, Wandy Chan12, Chris M Florkowski6, Martin Sage13, Thomas Höfken14, Bader Alhaddad2, Laura S Kremer2, Robert Kopajtich2, René G Feichtinger4, Wolfgang Sperl4, Richard J Rodenburg15, Jean Claude Minet16, Angus Dobbie17, Tim M Strom2, Thomas Meitinger18, Peter M George19, Colin A Johnson3, Robert W Taylor7, Holger Prokisch2, Kit Doudney1, Johannes A Mayr20.
Abstract
We have used whole-exome sequencing in ten individuals from four unrelated pedigrees to identify biallelic missense mutations in the nuclear-encoded mitochondrial inorganic pyrophosphatase (PPA2) that are associated with mitochondrial disease. These individuals show a range of severity, indicating that PPA2 mutations may cause a spectrum of mitochondrial disease phenotypes. Severe symptoms include seizures, lactic acidosis, cardiac arrhythmia, and death within days of birth. In the index family, presentation was milder and manifested as cardiac fibrosis and an exquisite sensitivity to alcohol, leading to sudden arrhythmic cardiac death in the second decade of life. Comparison of normal and mutant PPA2-containing mitochondria from fibroblasts showed that the activity of inorganic pyrophosphatase was significantly reduced in affected individuals. Recombinant PPA2 enzymes modeling hypomorphic missense mutations had decreased activity that correlated with disease severity. These findings confirm the pathogenicity of PPA2 mutations and suggest that PPA2 is a cardiomyopathy-associated protein, which has a greater physiological importance in mitochondrial function than previously recognized.Entities:
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Year: 2016 PMID: 27523597 PMCID: PMC5011043 DOI: 10.1016/j.ajhg.2016.06.027
Source DB: PubMed Journal: Am J Hum Genet ISSN: 0002-9297 Impact factor: 11.025
Figure 1Pedigree Structure, PPA2 Genomic Organization Conservation, and Family 1 Variant Modeling
(A) Pedigrees of four families identified with mutations in PPA2 (GenBank: NM_176869.2) encoding the mitochondrial inorganic pyrophosphatase. Individuals with a question mark have not been tested. Mutations found in more than one family are colored.
(B) Location of mutations within the gene, and phylogenetic conservation of the predicted missense mutations.
(C) Space fill model showing position of p.Pro228 at boundary of dimers and p.Glu172 in the active site produced in CN3D with reference PDB: 1M38.
(D) Left: Structural model of one molecule of PPA2 showing the position of four mutations in folded structure (red). Residues that are known to be critical to PPA2 function in S. cerevisiae are highlighted in yellow. Right: Space fill of the PPA2 active site showing three substitutions are located at the surface of the active site. Models produced using Swiss-PdbViewer (with reference PDB: 1M38).
Figure 2Cardiac Fibrosis in PPA2 Deficiency
(A) Affected individual P3, post mortem section through left ventricle showing a virtually circumferential lamina of scarring in midmyocardium with focal subendocardial involvement. Fibrosis is marked by arrows.
(B and C) Low-power (B) (bar equals 1 mm) and high-power (C) (bar equals 25 μm) microscopy of the posterior freewall of the left ventricle showing prominent midmyocardial loose fibrosis in P3 (hematoxylin and eosin staining).
(D) Cardiac MRI showing prominent midmyocardial fibrosis in affected individual P4 (at 25 years of age), marked by arrows.
Genetic and Clinical Findings in Individuals with PPA2 Variants
| F1, II:1, P1 | M | c.[514G>A];[683C>T], p.[Glu172Lys];[Pro228Leu] | ND | 4 years | 15 years | autopsy: slight dilation of both ventricles; small pale area in the epicardium of the left ventricle, evidence of focal inflammation with neutrophils, lymphocytes, and eosinophils | sensitive to small amounts of alcohol |
| F1, II:2, P2 | M | c.[514G>A];[683C>T], p.[Glu172Lys];[Pro228Leu] | ND | 14 years | alive at 38 years | cardiac MRI: myocardial fibrosis; received implantable defibrillator | sensitive to small amounts of alcohol |
| F1, II:3, P3 | M | c.[514G>A];[683C>T], p.[Glu172Lys];[Pro228Leu] | ND | 10 years | 20 years | autopsy: dilation of the left ventricle, circumferential lamina of scarring in midmyocardium with focal subendocardial involvement; very widespread mostly mature scarring of midmyocardium in all sectors | sensitive to small amounts of alcohol |
| F1, II:4, P4 | F | c.[514G>A];[683C>T], p.[Glu172Lys];[Pro228Leu] | normal in skeletal muscle | 9 years | alive at 33 years | cardiac MRI: myocardial fibrosis; received implantable defibrillator. | sensitive to small amounts of alcohol; immunohistochemical studies of skeletal muscle showed changes suggestive of a mild chronic myopathy |
| F2, II:, P5 | M | c.[500C>T];[500C>T], p.[Pro167Leu];[Pro167Leu] | ND | 10 days | 11 days | autopsy: herds of fresh necrosis mainly of the right heart and interstitial lymphocyte infiltration; electron microscopy: myocard showed mitochondria with degeneration of cristae | elevated plasma lactate levels; tachypnoea and tachycardia; tonic-clonic seizures; death after severe bradycardia |
| F2, II:2, P6 | F | c.[500C>T];[500C>T], p.[Pro167Leu];[Pro167Leu] | normal in skeletal muscle and fibroblasts | 14 days | 14 days | autopsy: acute and subacute necrosis more pronounced in the right heart more severe than in the left heart; electron microscopy: myocardium showed mitochondria with degeneration of cristae like in P5 | metabolic acidosis with elevated plasma lactate levels; tachypneoa; vomiting, generalized seizure; cardio-respiratory decompensation; death 6.5 hr after onset of symptoms; multiple subacute necroses in the semioval center of both cerebral hemispheres |
| F2, II:3, P7 | M | c.[500C>T];[500C>T], p.[Pro167Leu];[Pro167Leu] | normal in skeletal muscle and fibroblasts; heart muscle: LV: CI 4.1 (5.5–51.5) and CIV 64 (73.2–516.6) decreased, RV: CI not detectable, CII 9.0 (25.8–40.7), CIV 42 (73.2-516.6) | 3 days | 32 days | cardiac tachyarrhythmia; ECG showed hypodynamic right ventricle; autopsy: myocardium without necrosis and inflammatory infiltrations; myocytes with reduced amount of myofibrils; region of fibrosis, partially fat tissue in the right heart | elevated plasma lactate, transaminases, lactate dehydrogenase, creatine kinase (CK), CK-MB, and troponin levels |
| F3, II:1, P8 | F | c.[500C>T];[500C>T], p.[Pro167Leu];[Pro167Leu] | ND | 5.5 months | 5.5 months | autopsy: evidence for long-standing myocyte loss, increased interstitial myocyte loss, increased interstitial collagen, focal myocyte fiber disarray in the left ventricle and interventricular septum | 24 hr history of vomiting and diarrhea, 1× seizures; multiple cardiac arrests; hypoxic injury of the brain; the liver showed mild fatty change |
| F3, II:3, P9 | F | c.[500C>T];[500C>T], p.[Pro167Leu];[Pro167Leu] | normal in skeletal muscle | 8 months | 11 months | autopsy: extensive fibrosis of the heart muscle | plasma lactate elevated, diarrhea, vomiting; focal seizure then generalized seizure; cardiac arrest |
| F4, II:1, P10 | M | c.[380G>T];[514G>A], p.[Arg127Leu];[Glu172Lys] | normal in skeletal muscle; CI decreased heart muscle 0.026 (0.125 ± 0.048) | 10 months | 2 years | echocardiography: ejection fraction of 74%, mild left ventricular hypertrophy; autopsy: extensive transmural fibrosis of the left ventricle, acute myocardial ischemia | seizures, urinary organic acids: increased 3-hydroxybutyrate, acetoacetate, and C14:1, C14, C16:1 acylcarnitine elevation in blood. |
Abbreviations are as follows: AO, age at onset; F, female; M, male; ND, not determined.
Figure 3Inorganic Pyrophosphatase Activity in Fibroblast Mitochondria and Recombinant Enzymes
(A and B) Activity of inorganic pyrophosphatase in different fibroblast mitochondria isolations from affected individuals (P) P5, P7, and P9 compared to 14 control subjects (C) at different PPi concentrations and either (A) 0.5 mmol/L MgCl2 or (B) 3.0 mmol/L MgCl2.
(C) Inhibition of inorganic pyrophosphatase in fibroblast mitochondria from affected individual P5 (red squares) and three control subjects (black circles) incubated at 0.5 mmol/L MgCl2 and different CaCl2 concentrations and either 0.1 mmol/L PPi or 0.01 mmol/L PPi (small insert).
(D) Pyrophosphatase activity of equal amounts of recombinant proteins at different PPi concentrations.
(E) Protein amount of recombinant PPA2 protein was adjusted by western blot analysis and silver staining (Figure S9).
∗p < 0.01, ∗∗p < 0.0001 in Student’s unpaired t test. The error bars in this graph indicate the standard error of the mean.