Literature DB >> 27522211

The patterns of bacterial community and relationships between sulfate-reducing bacteria and hydrochemistry in sulfate-polluted groundwater of Baogang rare earth tailings.

Xinli An1,2, Paul Baker3, Hu Li1,2, Jianqiang Su1, Changping Yu1, Chao Cai4.   

Abstract

Microorganisms are the primary agents responsible for the modification, degradation, and/or detoxification of pollutants, and thus, they play a major role in their natural attenuation; yet, little is known about the structure and diversity of the subsurface community and relationships between microbial community and groundwater hydrochemistry. In this study, denaturing gradient gel electrophoresis (DGGE) and terminal restriction fragment length polymorphism (T-RFLP) allowed a comparative microbial community analysis of sulfate-contaminated groundwater samples from nine different wells in the region of Baogang rare earth tailings. Using real-time PCR, the abundance of total bacteria and the sulfate-reducing genes of aprA and dsrB were quantified. Statistical analyses showed a clear distinction of the microbial community diversity between the contaminated and uncontaminated samples, with Proteobacteria being the most dominant members of the microbial community. SO42- concentrations exerted a significant effect on the variation of the bacterial community (P < 0.05), with higher concentrations of sulfate reducing the microbial diversity (H' index), indicating that human activity (e.g., mining industries) was a possible factor disturbing the structure of the bacterial community. Quantitative analysis of the functional genes showed that the proportions of dsrB to total bacteria were 0.002-2.85 %, and the sulfate-reducing bacteria (SRB) were predominant within the prokaryotic community in the groundwater. The uncontaminated groundwater with low sulfate concentration harbored higher abundance of SRB than that in the polluted samples, while no significant correlation was observed between sulfate concentrations and SRB abundances in this study, suggesting other environmental factors possibly contributed to different distributions and abundances of SRB in the different sites. The results should facilitate expanded studies to identify robust microbe-environment interactions and provide a strong foundation for qualitative exploration of the bacterial diversity in rare earth tailings groundwater that might ultimately be incorporated into the remediation of environmental contamination.

Entities:  

Keywords:  DGGE; Groundwater; Microbial community; Rare earth tailings; Real-time PCR; Sulfate-reducing bacteria (SRB); T-RFLP

Mesh:

Substances:

Year:  2016        PMID: 27522211     DOI: 10.1007/s11356-016-7381-y

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  38 in total

1.  Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes.

Authors:  M Klein; M Friedrich; A J Roger; P Hugenholtz; S Fishbain; H Abicht; L L Blackall; D A Stahl; M Wagner
Journal:  J Bacteriol       Date:  2001-10       Impact factor: 3.490

2.  The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill.

Authors:  Philip E Luton; Jonathan M Wayne; Richard J Sharp; Paul W Riley
Journal:  Microbiology       Date:  2002-11       Impact factor: 2.777

3.  DsrB gene-based DGGE for community and diversity surveys of sulfate-reducing bacteria.

Authors:  Joke Geets; Brigitte Borremans; Ludo Diels; Dirk Springael; Jaco Vangronsveld; Daniel van der Lelie; Karolien Vanbroekhoven
Journal:  J Microbiol Methods       Date:  2005-12-07       Impact factor: 2.363

4.  Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR.

Authors:  Axel Schippers; Lev N Neretin
Journal:  Environ Microbiol       Date:  2006-07       Impact factor: 5.491

5.  Diversity of the dsrAB (dissimilatory sulfite reductase) gene sequences retrieved from two contrasting mudflats of the Seine estuary, France.

Authors:  Julie Leloup; Laurent Quillet; Thierry Berthe; Fabienne Petit
Journal:  FEMS Microbiol Ecol       Date:  2006-02       Impact factor: 4.194

6.  Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Authors:  Fumio Inagaki; Takuro Nunoura; Satoshi Nakagawa; Andreas Teske; Mark Lever; Antje Lauer; Masae Suzuki; Ken Takai; Mark Delwiche; Frederick S Colwell; Kenneth H Nealson; Koki Horikoshi; Steven D'Hondt; Bo B Jørgensen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

7.  Characterization of geochemical constituents and bacterial populations associated with As mobilization in deep and shallow tube wells in Bangladesh.

Authors:  Nora B Sutton; Geert M van der Kraan; Mark C M van Loosdrecht; Gerard Muyzer; Johannes Bruining; Ruud J Schotting
Journal:  Water Res       Date:  2009-01-24       Impact factor: 11.236

8.  Molecular analysis of the distribution and phylogeny of dissimilatory adenosine-5'-phosphosulfate reductase-encoding genes (aprBA) among sulfur-oxidizing prokaryotes.

Authors:  Birte Meyer; Jan Kuever
Journal:  Microbiology       Date:  2007-10       Impact factor: 2.777

9.  Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea.

Authors:  Julie Leloup; Alexander Loy; Nina J Knab; Christian Borowski; Michael Wagner; Bo Barker Jørgensen
Journal:  Environ Microbiol       Date:  2007-01       Impact factor: 5.491

10.  Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes.

Authors:  Giovanni Pilloni; Michael S Granitsiotis; Marion Engel; Tillmann Lueders
Journal:  PLoS One       Date:  2012-07-12       Impact factor: 3.240

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