Literature DB >> 27520074

Mediation mechanism of tyrosine 185 on the retinal isomerization equilibrium and the proton release channel in the seven-transmembrane receptor bacteriorhodopsin.

Xiaoyan Ding1, Honglei Wang2, Bo Peng1, Haolin Cui1, Yujiao Gao1, Dinu Iuga3, Peter J Judge4, Guohui Li5, Anthony Watts6, Xin Zhao7.   

Abstract

Electrostatic coupling leading to conformational changes in proteins is challenging to demonstrate directly, it requires that both the local, discrete electronic details and dynamic information relevant to the functional descriptions are probed. Here, as a novel study to address this challenge, the roles of an aromatic residue in influencing the functional conformational changes of a membrane receptor in its natural membrane environment are reported. Previously intractable discrete electronic details have been obtained using 2D solid-state NMR of specifically labelled receptor, reinforced with molecular dynamic simulations, mutational analysis and functional assays, supported by and compared with rigid-atom crystal structural models. Hydrogen bonding and hydrophobic interactions are identified as the mechanistic origin for direct electromechanical coupling to the dynamics of conformational changes within the receptor.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Aromatic residue; Electrostatic coupling; Functional conformational change; Mutational analysis and functional assays; Solid-state NMR

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Year:  2016        PMID: 27520074     DOI: 10.1016/j.bbabio.2016.08.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  1 in total

1.  Dynamic Coupling of Tyrosine 185 with the Bacteriorhodopsin Photocycle, as Revealed by Chemical Shifts, Assisted AF-QM/MM Calculations and Molecular Dynamic Simulations.

Authors:  Sijin Chen; Xiaoyan Ding; Chao Sun; Anthony Watts; Xiao He; Xin Zhao
Journal:  Int J Mol Sci       Date:  2021-12-18       Impact factor: 5.923

  1 in total

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