| Literature DB >> 27519526 |
Solomon Ngutor Karshima1, Ikwe Ajogi2, Garba Mohammed3.
Abstract
BACKGROUND: Animal trypanosomosis is a major economic disease in Nigeria causing considerable morbidity and mortality in livestock. Despite reports in other animals, the disease is under reported in pigs.Entities:
Keywords: Eco-epidemiology; Prevalence of porcine trypanosomosis; Seasonal distribution; Species-specific PCR; Tsetse density and infection rates
Mesh:
Year: 2016 PMID: 27519526 PMCID: PMC4983089 DOI: 10.1186/s13071-016-1732-x
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Map of Nigeria showing Taraba State, Karim Lamido and the study sites
Primer names, targets, sequences and amplicon sizes for PCR detection of African trypanosomes
| Primer [Reference] | Target species | Target gene | Sequence (5'-3') | Amplicon size (bp) |
|---|---|---|---|---|
| TBR1 [ |
| 177 bp repeat | cgaatgaatattaaacaatgcgcagt | 173 |
| TBR2 [ | Sequence | agaaccatttattagctttgttgc | ||
| TCK1 [ |
| SDNAm | gtgcccaaatttgaagtgat | 294 |
| TCK2 [ | actcaaaatcgtgcacctcg | |||
| TCF1 [ |
| SDNAm | ggacacgccagaaggtactt | 350 |
| TCF2 [ | gttctcgcaccaaatccaac | |||
| TCS1 [ |
| SDNAm | cgagaacgggcactttgcga | 316 |
| TCS2 [ | ggacaaagaaatcccgcaca | |||
| TVWI [ |
| ILDat 1.2 | gtgctccatgtgccacgttg | 175 |
| TVW2 [ | catatggtctgggagcgggt | |||
| TeRoTat 920 F [ |
| RoTat 1.2 | ctgaagaggttggaaatggagaag | 151 |
| TeRoTat 1070R [ | VSG gene | gtttcggtggttctgttgttgtta | ||
| TgsGP-F [ |
| TgsGP | gctgctgtgttcggagagc | 308 |
| TgsGP-R [ |
| gccatcgtgcttgccgctc | ||
| SRA-F [ |
| SRA | atagtgacaagatgcgtactcaacgc | 284 |
| SRA-R [ |
| aatgtgttcgagtacttcggtcacgct |
Prevalence of porcine trypanosomosis in relation to body condition of pigs
| Body condition | Number examined (%) | Number positive | Prevalence (%) |
|
|---|---|---|---|---|
| Good | 417 (58.6) | 63 | 15.1 | |
| Intermediate | 173 (24.3) | 18 | 10.4 | < 0.0001 |
| Poor | 122 (17.1) | 37 | 30.3 | (22.10) |
| Total | 712 (100) | 118 | 16.6 |
Reaction conditions for different polymerase chain reactions
| PCR | PD Temp/time | No. of cycles | DTemp/time | T | ETemp/time | FE Temp/time |
|---|---|---|---|---|---|---|
| TBR | 94 °C, 3 min | 35 | 94 °C, 30 s | 55 °C, 1 min | 72 °C, 1 min | 72 °C, 5 min |
| TCF, TCK and TCS | 94 °C, 3 min | 35 | 94 °C, 1 min | 60 °C, 2 min | 72 °C, 1 min | 72 °C, 5 min |
| WA-TV | 94 °C, 1 min | 35 | 94 °C, 30 s | 55 °C, 1 min | 72 °C, 2 min | 72 °C, 5 min |
| TeRoTat | 95 °C, 2 min | 35 | 95 °C, 30 s | 58 °C, 30 s | 72 °C, 1 min | 72 °C, 5 min |
| TgsGP and SRA | 95 °C, 15 min | 45 | 95 °C, 1 min | 63 °C, 1 min | 72 °C, 1 min | 72 °C, 5 min |
Abbreviations: PD (Pre-denaturation), D (denaturation), Tm (annealing temperature), E (extension), FE (final extension), Temp (temperature)
Fig. 2Distribution of Trypanosoma species among the 118 positive pigs. Abbreviations: TBB, T. b. brucei; TCF, T. congolense forest; TCS, T. congolense savannah; TBB + TCF, T. b. brucei and T. congolense forest mixed infections; TBB + TCS, T. b. brucei and T. congolense savannah mixed infections; TCF + TCS, T. congolense forest and T. congolense savannah mixed infections
Seasonal distribution of porcine trypanosomosis in Karim Lamido
| Season | Number examined | Number positive (%) |
|
|
| Mixed infections (%) |
|---|---|---|---|---|---|---|
| Early dry | 178 | 29 (16.3) | 15 (8.4) | 4 (2.3) | 6 (3.4) | 3 (1.7) |
| Late dry | 178 | 14 (7.9) | 8 (4.5) | 1 (0.6) | 2 (1.1) | 2 (1.1) |
| Early rainy | 178 | 33 (18.5) | 18 (10.1) | 6 (3.4) | 4 (2.3) | 11 (6.2) |
| Late rainy | 178 | 42 (23.6) | 22 (12.4) | 3 (1.7) | 7 (3.9) | 6 (3.4) |
| Total | 712 | 118 (16.6) | 63 (8.8) | 14 (2.0) | 19 (2.7) | 22 (3.1) |
Age and sex based prevalence of porcine trypanosomosis in Karim Lamido
| Variable | Number examined (%) | Number positive | Prevalence (%) |
| Odds ratio (95 % CI) |
|---|---|---|---|---|---|
| Age | |||||
| Adults (> 6 months) | 484 (67.9) | 93 | 17.2 | 0.0057 | 1.932 |
| Piglets (≤ 6 months) | 228 (32.1) | 25 | 15.4 | (7.629) | (1.203–3.100) |
| Total | 712 (100) | 118 | 16.6 | ||
| Sex | |||||
| Female | 458 (64.3) | 91 | 19.9 | < 0.0001 | |
| Male | 254 (35.7) | 27 | 10.6 | (10.09) | 2.085 |
| Total | 712 (100) | 118 | 16.6 | (1.315–3.304) |
Apparent densities and infection rates of tsetse flies per season
| Season | Catch/trap/day | Total catch | No. of dead flies (%) | No. of teneral flies | No. of subjected to PCR | No. of infected (%) | GP (%) | GT (%) |
|---|---|---|---|---|---|---|---|---|
| Early dry | 3.4 | 485 | 12 (2.5) | 3 (0.6) | 122 | 10 (8.2) | 7 (5.7) | 3 (2.5) |
| Late dry | 3.9 | 568 | 7 (1.2) | 5 (0.9) | 142 | 18 (12.7) | 6 (4.2) | 12 (8.5) |
| Early rainy | 5.0 | 713 | 6 (0.8) | 9 (1.3) | 178 | 37 (20.8) | 23 (12.9) | 14 (7.9) |
| Late rainy | 7.3 | 1056 | 7 (0.7) | 11 (1.0) | 264 | 62 (23.5) | 43 (16.3) | 19 (7.2) |
| Total | 4.9 | 2822 | 32 (1.1) | 28 (1.0) | 706 | 127 (18.0) | 79 (11.2) | 48 (6.8) |
Abbreviations: GP, Glossina palpalis; GT, Glossina tachinoides
Tsetse infection rates in relation to species of trypanosome
| Tsetse species | No. trapped | No. subjected to PCR (%) | No. infected (%) | TBB (%) | TCF (%) | TCS (%) | MI (%) |
|---|---|---|---|---|---|---|---|
|
| 1772 (62.8) | 451 (63.9) | 82 (18.2) | 41 (9.1) | 23 (5.1) | 12 (2.7) | 7 (1.6) |
|
| 1049 (37.2) | 255 (36.1) | 45 (17.7) | 22 (8.6) | 11 (4.3) | 6 (2.4) | 5 (2.0) |
| Total | 2822 (100) | 706 (100.0) | 127 (18.0) | 63 (8.9) | 34 (4.8) | 18 (2.6) | 12 (1.7) |
Abbreviations: TBB, Trypanosoma brucei brucei; TCF, T. congolence forest; TCS, T. congolense savannah; MI, mixed infections