Literature DB >> 27514939

3D implementation of the symbol nomenclature for graphical representation of glycans.

David F Thieker1, Jodi A Hadden2, Klaus Schulten2, Robert J Woods3.   

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Year:  2016        PMID： 27514939      PMCID： PMC5018049          DOI： 10.1093/glycob/cww076

Source DB:  PubMed          Journal:  Glycobiology        ISSN： 0959-6658            Impact factor:   4.313


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  6 in total

1.  Symbol Nomenclature for Graphical Representations of Glycans.

Authors:  Ajit Varki; Richard D Cummings; Markus Aebi; Nicole H Packer; Peter H Seeberger; Jeffrey D Esko; Pamela Stanley; Gerald Hart; Alan Darvill; Taroh Kinoshita; James J Prestegard; Ronald L Schnaar; Hudson H Freeze; Jamey D Marth; Carolyn R Bertozzi; Marilynn E Etzler; Martin Frank; Johannes Fg Vliegenthart; Thomas Lütteke; Serge Perez; Evan Bolton; Pauline Rudd; James Paulson; Minoru Kanehisa; Philip Toukach; Kiyoko F Aoki-Kinoshita; Anne Dell; Hisashi Narimatsu; William York; Naoyuki Taniguchi; Stuart Kornfeld
Journal:  Glycobiology       Date:  2015-12       Impact factor: 4.313

2.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

3.  Unique carbohydrate-carbohydrate interactions are required for high affinity binding between FcgammaRIII and antibodies lacking core fucose.

Authors:  Claudia Ferrara; Sandra Grau; Christiane Jäger; Peter Sondermann; Peter Brünker; Inja Waldhauer; Michael Hennig; Armin Ruf; Arne Christian Rufer; Martine Stihle; Pablo Umaña; Jörg Benz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

4.  Techniques for visualization of carbohydrate molecules.

Authors:  Michelle Kuttel; James Gain; Anton Burger; Ian Eborn
Journal:  J Mol Graph Model       Date:  2006-03-24       Impact factor: 2.518

5.  Lack of fucose on human IgG1 N-linked oligosaccharide improves binding to human Fcgamma RIII and antibody-dependent cellular toxicity.

Authors:  Robert L Shields; Jadine Lai; Rodney Keck; Lori Y O'Connell; Kyu Hong; Y Gloria Meng; Stefanie H A Weikert; Leonard G Presta
Journal:  J Biol Chem       Date:  2002-05-01       Impact factor: 5.157

6.  Three-dimensional representations of complex carbohydrates and polysaccharides--SweetUnityMol: a video game-based computer graphic software.

Authors:  Serge Pérez; Thibault Tubiana; Anne Imberty; Marc Baaden
Journal:  Glycobiology       Date:  2014-12-04       Impact factor: 4.313
  6 in total
  27 in total

1.  Induction of Antibodies Directed Against Branched Core O-Mannosyl Glycopeptides-Selectivity Complimentary to the ConA Lectin.

Authors:  Sabine Stahl; Jin Yu; Oliver C Grant; Christian Pett; S Strahl; Robert J Woods; Ulrika Westerlind
Journal:  Chemistry       Date:  2017-02-16       Impact factor: 5.236

Review 2.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

3.  Updates to the Symbol Nomenclature for Glycans guidelines.

Authors:  Sriram Neelamegham; Kiyoko Aoki-Kinoshita; Evan Bolton; Martin Frank; Frederique Lisacek; Thomas Lütteke; Noel O'Boyle; Nicolle H Packer; Pamela Stanley; Philip Toukach; Ajit Varki; Robert J Woods
Journal:  Glycobiology       Date:  2019-08-20       Impact factor: 4.313

4.  Substrate recognition and catalysis by GH47 α-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.

Authors:  Yong Xiang; Khanita Karaveg; Kelley W Moremen
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-17       Impact factor: 11.205

5.  Applying Pose Clustering and MD Simulations To Eliminate False Positives in Molecular Docking.

Authors:  Spandana Makeneni; David F Thieker; Robert J Woods
Journal:  J Chem Inf Model       Date:  2018-03-09       Impact factor: 4.956

6.  A Traveling Wave Ion Mobility Spectrometry (TWIMS) Study of the Robo1-Heparan Sulfate Interaction.

Authors:  Yuejie Zhao; Jeong Yeh Yang; David F Thieker; Yongmei Xu; Chengli Zong; Geert-Jan Boons; Jian Liu; Robert J Woods; Kelley W Moremen; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2018-03-08       Impact factor: 3.109

7.  O2 sensing-associated glycosylation exposes the F-box-combining site of the Dictyostelium Skp1 subunit in E3 ubiquitin ligases.

Authors:  M Osman Sheikh; David Thieker; Gordon Chalmers; Christopher M Schafer; Mayumi Ishihara; Parastoo Azadi; Robert J Woods; John N Glushka; Brad Bendiak; James H Prestegard; Christopher M West
Journal:  J Biol Chem       Date:  2017-09-19       Impact factor: 5.157

8.  DrawGlycan-SNFG: a robust tool to render glycans and glycopeptides with fragmentation information.

Authors:  Kai Cheng; Yusen Zhou; Sriram Neelamegham
Journal:  Glycobiology       Date:  2017-03-15       Impact factor: 4.313

Review 9.  New insights into influenza A specificity: an evolution of paradigms.

Authors:  Ye Ji; Yohanna Jb White; Jodi A Hadden; Oliver C Grant; Robert J Woods
Journal:  Curr Opin Struct Biol       Date:  2017-07-01       Impact factor: 6.809

10.  A terminal α3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii.

Authors:  Msano Mandalasi; Hyun W Kim; David Thieker; M Osman Sheikh; Elisabet Gas-Pascual; Kazi Rahman; Peng Zhao; Nitin G Daniel; Hanke van der Wel; H Travis Ichikawa; John N Glushka; Lance Wells; Robert J Woods; Zachary A Wood; Christopher M West
Journal:  J Biol Chem       Date:  2020-05-15       Impact factor: 5.157
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