| Literature DB >> 27510810 |
Zexin Tao1,2, Zhongtang Wang3, Xiaojuan Lin1,2, Suting Wang1,2, Haiyan Wang1,2, Hiromu Yoshida4, Aiqiang Xu1,2,5, Yanyan Song5.
Abstract
This study described the results of environmental enterovirus surveillance conducted in Shandong Province of China in 2013. Altogether 39 sewage samples were collected and 873 enterovirus isolates (including 334 polioviruses) belonging to 22 serotypes were obtained. Echovirus (E) -7, coxsackievirus (CV) -B5, E-11, E-6, and E-3 were the most commonly detected non-polio enterovirus serotypes, and phylogeny of E-7 and CV-B5 was described. The numbers of isolates of different serotypes from sewage supernatant were compared with those from the solids. Interestingly, dramatic divergence was observed between the supernatant and solids origin for the serotypes of E-3 and E-6, which were prone to the solids and supernatant, respectively. A following adsorption test with E-3 and E-6 added sewage specimens confirmed the different preference. Furthermore, the adsorption of Sabin poliovirus type 1 to the solids under different conditions was investigated, and the results showed that acid medium, cold temperature, and high solids concentration facilitated the viral adsorption to the solids, whereas change of virus titer did not influence the proportion of adsorption. These results highlighted the importance of combining the enterovirus isolates from the supernatant and solids together in environmental surveillance so as to better understand the local circulation of different serotypes.Entities:
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Year: 2016 PMID: 27510810 PMCID: PMC4980594 DOI: 10.1038/srep31474
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Number of isolates of different serotypes from environmental surveillance in 2013 and the comparison between the solids and supernatant origin.
| Serotype | No. of isolates from all sewage samples | Comparison of no. of isolates from the solids and supernatant of 26 sewage samples | ||||||
|---|---|---|---|---|---|---|---|---|
| City | Sum | Sewage component | Sum | Wilcoxon Signed Ranks Test | ||||
| Jinan | Linyi | Solids | Supernatant | Z | ||||
| PV-1 | 90 | 55 | 145 | 72 | 58 | 130 | 1.502 | 0.133 |
| PV-2 | 53 | 23 | 76 | 29 | 40 | 69 | 1.216 | 0.224 |
| PV-3 | 82 | 31 | 113 | 69 | 36 | 105 | 1.882 | 0.06 |
| CV-A4 | 1 | 0 | 1 | 1 | 0 | 1 | ||
| E-3 | 9 | 26 | 35 | 30 | 5 | 35 | 2.751 | 0.006 |
| E-6 | 36 | 4 | 40 | 4 | 27 | 31 | 2.384 | 0.017 |
| E-7 | 96 | 163 | 259 | 107 | 94 | 201 | 0.803 | 0.422 |
| E-9 | 0 | 1 | 1 | 1 | 0 | 1 | ||
| E-11 | 26 | 33 | 59 | 32 | 19 | 51 | 1.388 | 0.165 |
| E-12 | 2 | 0 | 2 | 1 | 0 | 1 | ||
| E-13 | 5 | 3 | 8 | 4 | 4 | 8 | ||
| E-14 | 0 | 2 | 2 | 1 | 1 | 2 | ||
| E-19 | 10 | 0 | 10 | 4 | 5 | 9 | ||
| E-20 | 0 | 2 | 2 | 0 | 0 | 0 | ||
| E-21 | 0 | 2 | 2 | 1 | 1 | 2 | ||
| E-25 | 0 | 3 | 3 | 2 | 0 | 2 | ||
| E-30 | 2 | 3 | 5 | 0 | 5 | 5 | ||
| CV-B3 | 1 | 0 | 1 | 0 | 0 | 0 | ||
| CV-B4 | 3 | 0 | 3 | 0 | 2 | 2 | ||
| CV-B5 | 22 | 55 | 77 | 16 | 24 | 40 | 1.153 | 0.249 |
| CV-A21 | 1 | 1 | 2 | 1 | 0 | 1 | ||
| EV-C96 | 1 | 0 | 1 | 0 | 1 | 1 | ||
| Mix | 15 | 11 | 26 | 11 | 9 | 20 | ||
| Total EV | 455 | 418 | 873 | 386 | 331 | 717 | ||
*Indicates a P value less than 0.05.
a“Mix” indicates NPEV isolates that could not be serotyped by RIVM antibody pools, and VP1 sequencing revealed mixed peaks.
Figure 1Phylogenetic analysis of E-7 (A) and CV-B5 (B) based on VP1 sequences.
The phylogenetic trees were constructed using Mega, version 4.0, using the NJ method based on 712-nt (positions 2611 to 3322 on strain Wallace) and 685-nt (positions 2611 to 3295 on strain Faulkner) partial VP1 sequences of E-7 and CV-B5, respectively. ●, global reference strains. □, Shandong strains previously isolated from AFP cases or sewage. ▲ in B, CV-B5 strains from two aseptic meningitis outbreaks in Shandong in 2005 and 2009, respectively. The rest are sequences from environmental strains in this study.
Figure 2Monthly distribution of PVs (A,B) and NPEVs (C,D) in different samples collected in Jinan (A,C) and Linyi (B,D) in 2013.
“S” and “W” in the X-axis are abbreviations for “Solids” and “Water”, respectively.
Test on adsorption of PV-1, E-3 and E-6 to the solids.
| Serotype/Strain | Titer (TCID50/100 μl) | Ratio of solids adsorption | ||
|---|---|---|---|---|
| Total | Supernatant | Solids | ||
| PV-1/Sabin | 304 | 215 | 89 | 29.3% |
| E-3/Morrisey | 256 | 76 | 180 | 70.3% |
| E-3/ JN12010 | 256 | 54 | 202 | 78.9% |
| E-6/ JN111219-1 | 256 | 239 | 17 | 6.6% |
Adsorption of PV-1 to the solids at different pHs.
| pHs | Titer (TCID50/100 μl) | Adsorption ratio of the solids | ||
|---|---|---|---|---|
| Total | Supernatant | Solids | ||
| 1 | 0 | 0 | 0 | / |
| 3 | 0 | 0 | 0 | / |
| 5 | 362 | 0 | 362 | 100% |
| 7 | 362 | 128 | 234 | 64.6% |
| 9 | 362 | 256 | 106 | 29.3% |
| 11 | 1.19 | 0 | 1.19 | / |
| 13 | 0 | 0 | 0 | / |
*Virions were hardly detected probably due to inactivation at these pHs.
Adsorption of PV-1 to the solids at different temperatures.
| Temperatures | Titer (TCID50/100 μl) | Adsorption ratio of the solids | ||
|---|---|---|---|---|
| Total | Supernatant | Solids | ||
| 4 °C | 362 | 92 | 270 | 74.6% |
| 20 °C | 362 | 220 | 142 | 39.2% |
| 37 °C | 362 | 208 | 154 | 42.5% |
Adsorption of PV-1 to the solids at different viral titers.
| Expt no. | Titer (TCID50/100 μl) | Adsorption ratio of the solids | ||
|---|---|---|---|---|
| Total | Supernatant | Solids | ||
| 1 | 5792 | 1952 | 3840 | 66.3% |
| 2 | 1152 | 514 | 638 | 55.4% |
| 3 | 234 | 104 | 132 | 56.4% |
| 4 | 54 | 20 | 34 | 63.0% |
Adsorption and elution of PV-1 on the solids at different solids concentration.
| Sewage no. | Solids concentration (g/l) | Titer (TCID50/100 μl) | Ratio (%) | |||
|---|---|---|---|---|---|---|
| Supernatant | Adsorption to the solids | Elution from the solids | Adsorption to the solids | Elution from the solids | ||
| 1 | 0.45 | 304.4 | 57.6 | 47.8 | 15.90 | 83.00 |
| 2 | 0.90 | 256.0 | 106.0 | 86.1 | 29.28 | 81.23 |
| 3 | 1.35 | 215.3 | 146.7 | 118.2 | 40.53 | 80.50 |
| 4 | 1.80 | 181.0 | 181.0 | 144.8 | 49.99 | 80.02 |
| 5 | 2.70 | 90.5 | 271.5 | 108.6 | 75.00 | 40.00 |
| 6 | 3.60 | 90.5 | 271.5 | 102.4 | 75.00 | 37.72 |
| 7 | 4.50 | 76.1 | 285.9 | 111.5 | 78.98 | 39.00 |
| 8 | 5.40 | 76.1 | 285.9 | 102.4 | 78.98 | 35.82 |
Figure 3Influence of solids concentration on the PV-1 adsorption to the solids and elution.
With the increase of the solids in the sewage, more PV-1 virions can be adsorbed on the solids. An abrupt decrease on elution ratio is presented when solids concentration ranges from 1.8 to 2.7 g/l.