Literature DB >> 27510223

Integrative analysis of human omics data using biomolecular networks.

Jonathan L Robinson1, Jens Nielsen.   

Abstract

High-throughput '-omics' technologies have given rise to an increasing abundance of genome-scale data detailing human biology at the molecular level. Although these datasets have already made substantial contributions to a more comprehensive understanding of human physiology and diseases, their interpretation becomes increasingly cryptic and nontrivial as they continue to expand in size and complexity. Systems biology networks offer a scaffold upon which omics data can be integrated, facilitating the extraction of new and physiologically relevant information from the data. Two of the most prevalent networks that have been used for such integrative analyses of omics data are genome-scale metabolic models (GEMs) and protein-protein interaction (PPI) networks, both of which have demonstrated success among many different omics and sample types. This integrative approach seeks to unite 'top-down' omics data with 'bottom-up' biological networks in a synergistic fashion that draws on the strengths of both strategies. As the volume and resolution of high-throughput omics data continue to grow, integrative network-based analyses are expected to play an increasingly important role in their interpretation.

Entities:  

Mesh:

Year:  2016        PMID: 27510223     DOI: 10.1039/c6mb00476h

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  10 in total

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3.  OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space.

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5.  Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.

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7.  Comparison of metabolic states using genome-scale metabolic models.

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8.  Visualizing metabolic network dynamics through time-series metabolomic data.

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Journal:  BMC Bioinformatics       Date:  2020-04-03       Impact factor: 3.169

Review 9.  Designing and interpreting 'multi-omic' experiments that may change our understanding of biology.

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Review 10.  Prospects and challenges of cancer systems medicine: from genes to disease networks.

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  10 in total

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