| Literature DB >> 27509181 |
Zhijun Li1, Tingyu Tang, Jianzong Du, Wenjuan Wu, Xiaoxi Zhou, Guangyue Qin.
Abstract
OBJECTIVE: To investigate genotype-phenotype changes between rs29230 in γ-aminobutyric acid B receptor (GABBR1), rs1801278 in insulin receptor substrate-1 (IRS-1), and rs9902709 in hypocretin neuropeptide precursor (HCRT) and obstructive sleep apnea hypopnea syndrome (OSAHS) in Chinese Han individuals.Entities:
Mesh:
Substances:
Year: 2016 PMID: 27509181 PMCID: PMC5588507 DOI: 10.1159/000448997
Source DB: PubMed Journal: Med Princ Pract ISSN: 1011-7571 Impact factor: 1.927
Fig. 1Flowchart for subject recruitment. PSG = Polysomnography.
Oligonucleotide sequences used for genotyping
| Gene | SNP | Allele/Primers | Sequences |
|---|---|---|---|
| rs1801278 | Allele | ATGGGCAGACTGGGCCCTGCACCTCCC[G/A]GGG-CTGCTAGCATTTGCAGGCCTA | |
| rs29230 | Allele | ATGGTTACCACATTGGGAGGAACCAG[T/C]CCTTTCGTCTGCCAGGTGAGGAGG | |
| rs9902709 | Allele | CTCTGGGATGGTGAGTCACCCCTCC[A/G]TC-CCTGGATCTTTACCTTTGTGGAA | |
Clinical and polysomnographic characteristics of the study subjects
| Variables | Patients | Controls | p value |
|---|---|---|---|
| Gender, n | 0.817 | ||
| Male | 110 (84.6%) | 112 (82.4%) | |
| Female | 20 (15.4%) | 24 (17.6%) | |
| Mean age ± SD, years | 51.78 ± 12.24 | 50.88 ± 8.21 | 0.617 |
| Mean BMI ± SD | 28.17 ± 3.62 | 25.38 ± 3.17 | |
| Normal weight, n | 14 (10.77%) | 44 (32.35%) | 0.005 |
| Overweight, n | 116 (89.23%) | 92 (67.65%) | |
| Severity of disease, n | <0.001 | ||
| Normal | 0 | 136 | |
| Mild | 26 (20%) | UN | |
| Moderate | 22 (16.92%) | UN | |
| Severe | 82 (63.08%) | UN | |
| AHI, events/h | 35.66 ± 19.52 | 3.43 ± 1.12 | <0.001 |
| Male | 38.78 ± 18.16 | 3.32 ± 2.05 | |
| Female | 25.76 ± 15.13 | 3.12 ± 1.07 | |
| Overweight | 39.12 ± 22.32 | 4.09 ± 1.87 | |
| Normal weight | 28.34 ± 13.32 | 2.89 ± 0.97 | |
| MAI, events/h | 26.28 ± 16.09 | 4.87 ± 1.56 | <0.001 |
| LSaO2, % | 74.27 ± 11.15 | 96.85 ± 3.8 | <0.001 |
| ODI4, events/h | 43.42 ± 25.17 | 4.16 ± 1.08 | |
| Sleep stages, % of TST | |||
| NREM1 | 54.21 ± 18.79 | 47.9 ± 20.04 | <0.001 |
| NREM2 | 99.73 ± 32.31 | 92.1 ± 36.21 | <0.001 |
| NREM3/4 | 60.51 ± 19.95 | 46.23 ± 15.72 | <0.001 |
| REM | 53.23 ± 18.31 | 39.74 ± 16.36 | <0.001 |
LSaO2 = Lowest oxygen saturation; MAI = microarousal index; NREM = non-rapid eye movement sleep; ODI4 = oxygen desaturation index; REM = rapid eye movement sleep; SD = standard deviation; TST = total sleep time; UN = unknown.
Allele and genotype distribution in the patients and controls
| Gene | Cases | Controls | χ2 | p value | OR (95% CI) | |
|---|---|---|---|---|---|---|
| Allele | 1.1857 | 0.2762 | ||||
| A | 255 (0.981) | 260 (0.942) | ||||
| G | 5 (0.019) | 16 (0.058) | 2.443 (0.465–12.820) | |||
| Genotype | 1.1408 | 0.5653 | ||||
| AG | 5 (0.038) | 6 (0.044) | ||||
| AA | 125 (0.962) | 128 (0.941) | ||||
| GG | 0 (0.000) | 2 (0.015) | ||||
| Allele | 5.4914 | 0.0191 | ||||
| T | 185 (0.717) | 228 (0.838) | ||||
| C | 73 (0.283) | 44 (0.162) | 0.493 (0.271–0.896) | |||
| Genotype | 7.7729 | 0.0205 | ||||
| CC | 12 (0.093) | 0 (0.000) | ||||
| TT | 65 (0.504) | 95 (0.699) | ||||
| CT | 52 (0.403) | 41 (0.301) | ||||
| Allele | 3.8819 | 0.0488 | ||||
| A | 0 (0.000) | 9 (0.033) | ||||
| G | 260 (1.000) | 263 (0.967) | ||||
| Genotype | 3.9421 | 0.0471 | ||||
| AG | 0 (0.000) | 9 (0.067) | ||||
| GG | 130 (1.000) | 127 (0.933) | ||||
Allele and genotype distribution in the patients and controls both according to gender
| Gene | Male | p value | OR | Female | controls | p value | OR | ||
|---|---|---|---|---|---|---|---|---|---|
| cases | controls | c ases | |||||||
| Allele | |||||||||
| A | 215 (0.977) | 215 (0.960) | 40 (1.000) | 45 (0.938) | |||||
| G | 5 (0.023) | 9 (0.040) | 0.4206 | 2 (0.359–11.149) | 0 (0.000) | 3 (0.062) | 0.3558 | ||
| Genotype | |||||||||
| AG | 5 (0.045) | 5 (0.044) | 0 (0.000) | 2 (0.083) | |||||
| AA | 105 (0.955) | 105 (0.938) | 20 (1.000) | 22 (0.917) | 0.3501 | ||||
| GG | 0 (0.000) | 2 (0.018) | 0.6092 | ||||||
| Allele | |||||||||
| T | 155 (0.705) | 188 (0.839) | 27 (0.750) | 40 (0.833) | |||||
| C | 65 (0.295) | 36 (0.161) | 0.0202 | 0.467 (0.243–0.895) | 9 (0.250) | 8 (0.167) | 0.650 | 0.7 (0.149–3.282) | |
| Genotype | |||||||||
| CC | 13 (0.118) | 0 (0.000) | |||||||
| TT | 57 (0.518) | 76 (0.679) | 10 (0.556) | 15 (0.625) | |||||
| CT | 40 (0.364) | 36 (0.321) | 0.0259 | 8 (0.444) | 9 (0.375) | 0.6039 | 0.625 (0.105–3.707) | ||
| Allele | |||||||||
| A | 0 (0.000) | 5 (0.022) | 0 (0.000) | 3 (0.063) | |||||
| G | 220 (1.000) | 219 (0.978) | 0.0839 | 40 (1.000) | 45 (0.937) | 0.3558 | |||
| Genotype | |||||||||
| AG | 0 (0.000) | 5 (0.045) | 0 (0.000) | 2 (0.083) | |||||
| GG | 110 (1.000) | 107 (0.955) | 0.0818 | 20 (1.000) | 22 (0.917) | 0.3501 | |||
Allele and genotype distribution in the patients and controls according to BMI
| Gene | Normal weight | p value | OR | Overweight | p value | OR | ||
|---|---|---|---|---|---|---|---|---|
| cases | controls | cases | controls | value | ||||
| rs9902709 | ||||||||
| Allele | ||||||||
| A | 28 (1.000) | 82 (0.976) | 227 (0.978) | 175 (0.951) | ||||
| G | 0 (0.000) | 2 (0.024) | 0.5602 | 3.029 (0.737–12.455) | 5 (0.022) | 9 (0.049) | 0.2615 | 2.591 (0.464–14.47) |
| Genotype | ||||||||
| AG | 0 (0.000) | 2 (0.048) | 5 (0.043) | 5 (0.054) | ||||
| AA | 14 (1.000) | 40 (0.952) | 0.5566 | 111 (0.957) | 85 (0.924) | |||
| GG | 0 (0.000) | 2 (0.022) | 0.5116 | |||||
| rs29230 | ||||||||
| Allele | ||||||||
| T | 23 (0.958) | 72 (0.857) | 165 (0.711) | 155 (0.842) | ||||
| C | 1 (0.042) | 12 (0.143) | 0.5882 | 1.833 (0.199–16.916) | 67 (0.289) | 29 (0.158) | 0.0333 | 0.487 (0.250–0.951) |
| Genotype | ||||||||
| TT | 10 (0.833) | 30 (0.714) | 58 (0.500) | 60 (0.652) | ||||
| CT | 0 | 0 | 45 (0.388) | 32 (0.348) | ||||
| CC | 2 (0.167) | 12 (0.286) | 0.5573 | 2.000 (0.191–20.899) | 13 (0.112) | 0 (0.000) | 0.0506 | |
| rs1801278 | ||||||||
| Allele | ||||||||
| A | 0 (0.000) | 4 (0.048) | 0 (0.000) | 4 (0.022) | ||||
| G | 28 (1.000) | 80 (0.952) | 0.4057 | 232 (1.000) | 180 (0.978) | 0.1106 | ||
| Genotype | ||||||||
| AG | 0 (0.000) | 5 (0.119) | 0 (0.000) | 4 (0.043) | ||||
| GG | 14 (1.000) | 37 (0.881) | 0.3968 | 116 (1.000) | 88 (0.957) | 0.1088 | ||
Allele and genotype distribution in OSAHS according to severity of disease
| Gene | OSAHS | p value | OR (95% CI) | OSAHS | p value | OR (95% CI) | OSAHS | p value | OR (95% CI) | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mild | moderate | mild | severe | moderate | severe | |||||||
| rs9902709 | ||||||||||||
| Allele | ||||||||||||
| A | 52 (1.000) | 44 (1.000) | 52 (1.000) | 159 (0.970) | 44 (1.000) | 159 (0.970) | ||||||
| G | 0 (0.000) | 0 (0.000) | 0 (0.000) | 5 (0.030) | 0.4215 | 0 (0.000) | 5 (0.030) | 0.4595 | ||||
| Genotype | ||||||||||||
| AG | 0 (0.000) | 0 (0.000) | 0 (0.000) | 5 (0.061) | 0 (0.000) | 5 (0.061) | ||||||
| AA | 26 (1.000) | 22 (1.000) | 26 (1.000) | 77 (0.939) | 0.4171 | 22 (1.000) | 77 (0.939) | 0.4551 | ||||
| rs29230 | ||||||||||||
| Allele | ||||||||||||
| T | 45 (0.865) | 31 (0.705) | 45 (0.865) | 105 (0.675) | 31 (0.705) | 105 (0.675) | ||||||
| C | 7 (0.135) | 13 (0.295) | 0.3123 | 2.063 | 7 (0.135) | 55 (0.325) | 0.0924 | 2.648 | 13 (0.295) | 55 (0.325) | 0.6398 | 1.284 |
| (0.499–8.530) | (0.827–8.478) | (0.450–3.663) | ||||||||||
| Genotype | ||||||||||||
| CC | 2 (0.077) | 2 (0.091) | 2 (0.077) | 6 (0.075) | 2 (0.091) | 6 (0.075) | ||||||
| TT | 20 (0.769) | 15 (0.682) | 20 (0.769) | 35 (0.438) | 15 (0.682) | 35 (0.438) | ||||||
| CT | 4 (0.154) | 5 (0.227) | 0.7044 | 4 (0.154) | 39 (0.487) | 0.0775 | 5 (0.227) | 39 (0.487) | 0.146 | |||
| rs1801278 | ||||||||||||
| Allele | ||||||||||||
| G | 52 (1.000) | 44 (1.000) | 52 (1.000) | 164 (1.000) | 44 (1.000) | 164 (1.000) | ||||||
| Genotype | ||||||||||||
| GG | 26 (1.000) | 22 (1.000) | 26 (1.000) | 82 (1.000) | 22 (1.000) | 82 (1.000) | ||||||