Literature DB >> 27507098

Insights into human evolution from ancient and contemporary microbiome studies.

Stephanie L Schnorr1, Krithivasan Sankaranarayanan2, Cecil M Lewis1, Christina Warinner3.   

Abstract

Over the past decade, human microbiome research has energized the study of human evolution through a complete shift in our understanding of what it means to be human. The microbiome plays a pivotal role in human biology, performing key functions in digestion, mood and behavior, development and immunity, and a range of acute and chronic diseases. It is therefore critical to understand its evolution and changing ecology through time. Here we review recent findings on the microbiota of diverse human populations, non-human primates, and past human populations and discuss the implications of this research in formulating a deeper evolutionary understanding of the human holobiont.
Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 27507098      PMCID: PMC5534492          DOI: 10.1016/j.gde.2016.07.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  165 in total

1.  Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

Authors:  Alison M Devault; G Brian Golding; Nicholas Waglechner; Jacob M Enk; Melanie Kuch; Joseph H Tien; Mang Shi; David N Fisman; Anna N Dhody; Stephen Forrest; Kirsten I Bos; David J D Earn; Edward C Holmes; Hendrik N Poinar
Journal:  N Engl J Med       Date:  2014-01-08       Impact factor: 91.245

2.  Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins.

Authors:  Matthias Meyer; Juan-Luis Arsuaga; Cesare de Filippo; Sarah Nagel; Ayinuer Aximu-Petri; Birgit Nickel; Ignacio Martínez; Ana Gracia; José María Bermúdez de Castro; Eudald Carbonell; Bence Viola; Janet Kelso; Kay Prüfer; Svante Pääbo
Journal:  Nature       Date:  2016-03-14       Impact factor: 49.962

Review 3.  The microbiome, parturition, and timing of birth: more questions than answers.

Authors:  Amanda L Prince; Kathleen M Antony; Derrick M Chu; Kjersti M Aagaard
Journal:  J Reprod Immunol       Date:  2014-04-18       Impact factor: 4.054

4.  Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Authors:  Maria G Dominguez-Bello; Elizabeth K Costello; Monica Contreras; Magda Magris; Glida Hidalgo; Noah Fierer; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

5.  Human genetics shape the gut microbiome.

Authors:  Julia K Goodrich; Jillian L Waters; Angela C Poole; Jessica L Sutter; Omry Koren; Ran Blekhman; Michelle Beaumont; William Van Treuren; Rob Knight; Jordana T Bell; Timothy D Spector; Andrew G Clark; Ruth E Ley
Journal:  Cell       Date:  2014-11-06       Impact factor: 41.582

6.  Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women.

Authors:  Hanneke Borgdorff; Evgeni Tsivtsivadze; Rita Verhelst; Massimo Marzorati; Suzanne Jurriaans; Gilles F Ndayisaba; Frank H Schuren; Janneke H H M van de Wijgert
Journal:  ISME J       Date:  2014-03-06       Impact factor: 10.302

7.  Gut Microbiome Diversity among Cheyenne and Arapaho Individuals from Western Oklahoma.

Authors:  Krithivasan Sankaranarayanan; Andrew T Ozga; Christina Warinner; Raul Y Tito; Alexandra J Obregon-Tito; Jiawu Xu; Patrick M Gaffney; Lori L Jervis; Derrell Cox; Lancer Stephens; Morris Foster; Gloria Tallbull; Paul Spicer; Cecil M Lewis
Journal:  Curr Biol       Date:  2015-12-06       Impact factor: 10.834

8.  Seasonal variation in human gut microbiome composition.

Authors:  Emily R Davenport; Orna Mizrahi-Man; Katelyn Michelini; Luis B Barreiro; Carole Ober; Yoav Gilad
Journal:  PLoS One       Date:  2014-03-11       Impact factor: 3.240

9.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

10.  Polyphasic analysis of a middle ages coprolite microbiota, Belgium.

Authors:  Sandra Appelt; Fabrice Armougom; Matthieu Le Bailly; Catherine Robert; Michel Drancourt
Journal:  PLoS One       Date:  2014-02-28       Impact factor: 3.240

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  13 in total

1.  The soil in our microbial DNA informs about environmental interfaces across host and subsistence modalities.

Authors:  Stephanie L Schnorr
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-10-05       Impact factor: 6.237

2.  The evolution and changing ecology of the African hominid oral microbiome.

Authors:  James A Fellows Yates; Irina M Velsko; Franziska Aron; Cosimo Posth; Courtney A Hofman; Rita M Austin; Cody E Parker; Allison E Mann; Kathrin Nägele; Kathryn Weedman Arthur; John W Arthur; Catherine C Bauer; Isabelle Crevecoeur; Christophe Cupillard; Matthew C Curtis; Love Dalén; Marta Díaz-Zorita Bonilla; J Carlos Díez Fernández-Lomana; Dorothée G Drucker; Elena Escribano Escrivá; Michael Francken; Victoria E Gibbon; Manuel R González Morales; Ana Grande Mateu; Katerina Harvati; Amanda G Henry; Louise Humphrey; Mario Menéndez; Dušan Mihailović; Marco Peresani; Sofía Rodríguez Moroder; Mirjana Roksandic; Hélène Rougier; Sandra Sázelová; Jay T Stock; Lawrence Guy Straus; Jiří Svoboda; Barbara Teßmann; Michael J Walker; Robert C Power; Cecil M Lewis; Krithivasan Sankaranarayanan; Katerina Guschanski; Richard W Wrangham; Floyd E Dewhirst; Domingo C Salazar-García; Johannes Krause; Alexander Herbig; Christina Warinner
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-18       Impact factor: 11.205

Review 3.  Can we prevent childhood Leukaemia?

Authors:  Mel Greaves; Valeria Cazzaniga; Anthony Ford
Journal:  Leukemia       Date:  2021-04-09       Impact factor: 11.528

Review 4.  Alzheimer's disease and symbiotic microbiota: an evolutionary medicine perspective.

Authors:  Molly Fox; Delaney A Knorr; Kacey M Haptonstall
Journal:  Ann N Y Acad Sci       Date:  2019-06-10       Impact factor: 6.499

Review 5.  Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles.

Authors:  Eleanor Joan Green; Camilla F Speller
Journal:  Genes (Basel)       Date:  2017-07-13       Impact factor: 4.096

6.  Microbiome and Health: Ramifications of Intelligent Deception.

Authors:  George B Stefano; Rachel Fine; Richard M Kream
Journal:  Med Sci Monit       Date:  2018-04-07

7.  The wild side of plant microbiomes.

Authors:  Juan E Pérez-Jaramillo; Víctor J Carrión; Mattias de Hollander; Jos M Raaijmakers
Journal:  Microbiome       Date:  2018-08-16       Impact factor: 14.650

8.  Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa.

Authors:  Stephanie L Schnorr; Courtney A Hofman; Shandukani R Netshifhefhe; Frances D Duncan; Tanvi P Honap; Julie Lesnik; Cecil M Lewis
Journal:  BMC Microbiol       Date:  2019-07-17       Impact factor: 3.605

Review 9.  The role of the brain-gut-microbiota axis in psychology: The importance of considering gut microbiota in the development, perpetuation, and treatment of psychological disorders.

Authors:  Michael Ganci; Emra Suleyman; Henry Butt; Michelle Ball
Journal:  Brain Behav       Date:  2019-09-30       Impact factor: 2.708

10.  Ecophylogenetics Clarifies the Evolutionary Association between Mammals and Their Gut Microbiota.

Authors:  Christopher A Gaulke; Holly K Arnold; Ian R Humphreys; Steven W Kembel; James P O'Dwyer; Thomas J Sharpton
Journal:  MBio       Date:  2018-09-11       Impact factor: 7.867

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