Literature DB >> 27503998

Mechanisms of Nucleosome Dynamics In Vivo.

Steven Henikoff1.   

Abstract

Nucleosomes function to tightly package DNA into chromosomes, but the nucleosomal landscape becomes disrupted during active processes such as replication, transcription, and repair. The realization that many proteins responsible for chromatin regulation are frequently mutated in cancer has drawn attention to chromatin dynamics; however, the basic mechanisms whereby nucleosomes are disrupted and reassembled is incompletely understood. Here, I present an overview of chromatin dynamics as has been elucidated in model organisms, in which our understanding is most advanced. A basic understanding of chromatin dynamics during normal developmental processes can provide the context for understanding how this machinery can go awry during oncogenesis.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2016        PMID: 27503998      PMCID: PMC5008063          DOI: 10.1101/cshperspect.a026666

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  100 in total

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2.  A gene complex controlling segmentation in Drosophila.

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4.  Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA.

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5.  Structural characterization of the histone variant macroH2A.

Authors:  Srinivas Chakravarthy; Sampath Kumar Y Gundimella; Cecile Caron; Pierre-Yves Perche; John R Pehrson; Saadi Khochbin; Karolin Luger
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

6.  Chromatin remodeling by nucleosome disassembly in vitro.

Authors:  Yahli Lorch; Barbara Maier-Davis; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

7.  The human and mouse replication-dependent histone genes.

Authors:  William F Marzluff; Preetam Gongidi; Keith R Woods; Jianping Jin; Lois J Maltais
Journal:  Genomics       Date:  2002-11       Impact factor: 5.736

8.  Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing.

Authors:  Gunnar Schotta; Anja Ebert; Veiko Krauss; Andreas Fischer; Jan Hoffmann; Stephen Rea; Thomas Jenuwein; Rainer Dorn; Gunter Reuter
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9.  HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis.

Authors:  Dominique Ray-Gallet; Jean-Pierre Quivy; Christine Scamps; Emmanuelle M-D Martini; Marc Lipinski; Geneviève Almouzni
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

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Review 1.  Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.

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Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

3.  Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.

Authors:  Andrew D Klocko; Miki Uesaka; Tereza Ormsby; Michael R Rountree; Elizabeth T Wiles; Keyur K Adhvaryu; Shinji Honda; Eric U Selker
Journal:  Genetics       Date:  2018-12-15       Impact factor: 4.562

Review 4.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

Review 5.  Regulation of Mammalian DNA Replication via the Ubiquitin-Proteasome System.

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Journal:  Adv Exp Med Biol       Date:  2017       Impact factor: 2.622

6.  A hexasome is the preferred substrate for the INO80 chromatin remodeling complex, allowing versatility of function.

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7.  RSC-Associated Subnucleosomes Define MNase-Sensitive Promoters in Yeast.

Authors:  Sandipan Brahma; Steven Henikoff
Journal:  Mol Cell       Date:  2018-12-13       Impact factor: 17.970

8.  Transient Kinetic Analysis of SWR1C-Catalyzed H2A.Z Deposition Unravels the Impact of Nucleosome Dynamics and the Asymmetry of Histone Exchange.

Authors:  Raushan K Singh; Jiayl Fan; Nathan Gioacchini; Shinya Watanabe; Osman Bilsel; Craig L Peterson
Journal:  Cell Rep       Date:  2019-04-09       Impact factor: 9.423

9.  Role of cell-type specific nucleosome positioning in inducible activation of mammalian promoters.

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  9 in total

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