Literature DB >> 27500568

Crystal structure of Arabidopsis thaliana calmodulin7 and insight into its mode of DNA binding.

Sanjeev Kumar1, Mohit Mazumder1, Nisha Gupta2, Sudip Chattopadhyay2, Samudrala Gourinath1.   

Abstract

Calmodulin (CaM) is a Ca(2+) sensor that participates in several cellular signaling cascades by interacting with various targets, including DNA. It has been shown that Arabidopsis thaliana CaM7 (AtCaM7) interacts with Z-box DNA and functions as a transcription factor [Kushwaha R et al. (2008) Plant Cell 20, 1747-1759; Abbas N et al. (2014) Plant Cell 26, 1036-1052]. The crystal structure of AtCaM7, and a model of the AtCAM7-Z-box complex suggest that Arg-127 determines the DNA-binding ability by forming crucial interactions with the guanine base. We validated the model using biolayer interferometry, which confirmed that AtCaM7 interacts with Z-box DNA with high affinity. In contrast, the AtCaM2/3/5 isoform does not show any binding, although it differs from AtCaM7 by only a single residue.
© 2016 Federation of European Biochemical Societies.

Entities:  

Keywords:  CaM; molecular modeling; protein crystallization; protein-DNA interaction

Mesh:

Substances:

Year:  2016        PMID: 27500568     DOI: 10.1002/1873-3468.12349

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

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Authors:  Sanjeev Kumar; Shalini Mishra; S Gourinath
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Review 2.  In Vitro Analytical Approaches to Study Plant Ligand-Receptor Interactions.

Authors:  Pedro Jimenez Sandoval; Julia Santiago
Journal:  Plant Physiol       Date:  2020-02-07       Impact factor: 8.340

Review 3.  Calmodulin7: recent insights into emerging roles in plant development and stress.

Authors:  Riya Basu; Siddhartha Dutta; Abhideep Pal; Mandar Sengupta; Sudip Chattopadhyay
Journal:  Plant Mol Biol       Date:  2021-08-16       Impact factor: 4.076

4.  Label-free Quantification of Direct Protein-protein Interactions with Backscattering Interferometry.

Authors:  Seher Abbas; Karl-Wilhelm Koch
Journal:  Bio Protoc       Date:  2021-12-20

5.  CALMODULIN1 and WRKY53 Function in Plant Defense by Negatively Regulating the Jasmonic Acid Biosynthesis Pathway in Arabidopsis.

Authors:  Chunyang Jiao; Kaixiang Li; Yixin Zuo; Junqing Gong; Zhujuan Guo; Yingbai Shen
Journal:  Int J Mol Sci       Date:  2022-07-13       Impact factor: 6.208

Review 6.  Towards Understanding Plant Calcium Signaling through Calmodulin-Like Proteins: A Biochemical and Structural Perspective.

Authors:  Valentina La Verde; Paola Dominici; Alessandra Astegno
Journal:  Int J Mol Sci       Date:  2018-04-30       Impact factor: 5.923

7.  Analysis of Arabidopsis TPK2 and KCO3 reveals structural properties required for K+ channel function.

Authors:  Chihiro Uehara; Kota Takeda; Tatsuki Ibuki; Tadaomi Furuta; Naomi Hoshi; Ellen Tanudjaja; Nobuyuki Uozumi
Journal:  Channels (Austin)       Date:  2020-12       Impact factor: 2.581

  7 in total

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