Literature DB >> 27495141

RNASwift: A rapid, versatile RNA extraction method free from phenol and chloroform.

Alison O Nwokeoji1, Peter M Kilby2, David E Portwood2, Mark J Dickman3.   

Abstract

RNASwift is an inexpensive, versatile method for the rapid extraction of RNA. Existing RNA extraction methods typically use hazardous chemicals including phenol, chloroform and formamide which are often difficult to completely remove from the extracted RNA. RNASwift uses sodium chloride and sodium dodecyl sulphate to lyse the cells and isolate the RNA from the abundant cellular components in conjunction with solid phase extraction or isopropanol precipitation to rapidly purify the RNA. Moreover, the purified RNA is directly compatible with downstream analysis. Using spectrophotometry in conjunction with ion pair reverse phase chromatography to analyse the extracted RNA, we show that RNASwift extracts and purifies RNA of higher quality and purity in comparison to alternative RNA extraction methods. The RNASwift method yields approximately 25 μg of RNA from only 10(8)Escherichia coli cells. Furthermore, RNASwift is versatile; the same simple reagents can be used to rapidly extract RNA from a variety of different cells including bacterial, yeast and mammalian cells. In addition to the extraction of total RNA, the RNASwift method can also be used to extract double stranded RNA from genetically modified E. coli in higher yields compared to alternative methods.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Ion pair reverse phase HPLC; RNA extraction; RNA purification; UV spectrophotometry

Mesh:

Substances:

Year:  2016        PMID: 27495141     DOI: 10.1016/j.ab.2016.08.001

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  10 in total

1.  Foundation and Clinical Evaluation of a New Method for Detecting SARS-CoV-2 Antigen by Fluorescent Microsphere Immunochromatography.

Authors:  Chunyan Zhang; Lei Zhou; Kang Du; Ying Zhang; Jing Wang; Lijuan Chen; Yanning Lyu; Jun Li; Hao Liu; Junli Huo; Fei Li; Jiayi Wang; Peipei Sang; Si Lin; Yi Xiao; Kan Zhang; Kunlun He
Journal:  Front Cell Infect Microbiol       Date:  2020-11-30       Impact factor: 5.293

2.  MicroRNA-30b protects myocardial cell function in patients with acute myocardial ischemia by targeting plasminogen activator inhibitor-1.

Authors:  Bin Li; Jie Hu; Xingpeng Chen
Journal:  Exp Ther Med       Date:  2018-04-10       Impact factor: 2.447

3.  Simple and Economical Extraction of Viral RNA and Storage at Ambient Temperature.

Authors:  Sarah Hernandez; Fátima Cardozo; David R Myers; Alejandra Rojas; Jesse J Waggoner
Journal:  Microbiol Spectr       Date:  2022-06-01

4.  Characterization and Sequence Mapping of Large RNA and mRNA Therapeutics Using Mass Spectrometry.

Authors:  Christina J Vanhinsbergh; Angela Criscuolo; Jennifer N Sutton; Keeley Murphy; Andrew J K Williamson; Ken Cook; Mark J Dickman
Journal:  Anal Chem       Date:  2022-05-12       Impact factor: 8.008

5.  Plant-Microbe Interaction: Transcriptional Response of Bacillus Mycoides to Potato Root Exudates.

Authors:  Yanglei Yi; Zhibo Li; Oscar P Kuipers
Journal:  J Vis Exp       Date:  2018-07-02       Impact factor: 1.355

6.  Purification and characterisation of dsRNA using ion pair reverse phase chromatography and mass spectrometry.

Authors:  Alison O Nwokeoji; An-Wen Kung; Peter M Kilby; David E Portwood; Mark J Dickman
Journal:  J Chromatogr A       Date:  2016-12-21       Impact factor: 4.759

7.  High resolution fingerprinting of single and double-stranded RNA using ion-pair reverse-phase chromatography.

Authors:  Alison O Nwokeoji; Mark E Earll; Peter M Kilby; David E Portwood; Mark J Dickman
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2018-11-28       Impact factor: 3.205

8.  Circular dumbbell miR-34a-3p and -5p suppresses pancreatic tumor cell-induced angiogenesis and activates macrophages.

Authors:  Manu Gnanamony; Lusine Demirkhanyan; Liang Ge; Paresh Sojitra; Sneha Bapana; Joseph A Norton; Christopher S Gondi
Journal:  Oncol Lett       Date:  2020-11-25       Impact factor: 2.967

9.  Overexpression of microRNA-506-3p aggravates the injury of vascular endothelial cells in patients with hypertension by downregulating Beclin1 expression.

Authors:  Fanfan Yi; Yugui Hao; Xiaoyi Chong; Wei Zhong
Journal:  Exp Ther Med       Date:  2018-01-10       Impact factor: 2.447

10.  Effects of a Resident Yeast from the Honeybee Gut on Immunity, Microbiota, and Nosema Disease.

Authors:  James P Tauber; Vy Nguyen; Dawn Lopez; Jay D Evans
Journal:  Insects       Date:  2019-09-13       Impact factor: 2.769

  10 in total

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