Literature DB >> 27492236

Binding Kinetics in Drug Discovery.

Noelia Ferruz1,2, Gianni De Fabritiis3,4.   

Abstract

Over the last years, researchers have increasingly become interested in measuring and understanding drugs' binding kinetics, namely the time in which drug and its target associate and dissociate. Historically, drug discovery programs focused on the optimization of target affinity as a proxy of in-vivo efficacy. However, often the efficacy of a ligand is not appropriately described by the in-vitro measured drug-receptor affinity, but rather depends on the lifetime of the in-vivo drug-receptor interaction. In this review we review recent works that highlight the importance of binding kinetics, molecular determinants for rational optimization and the recent emergence of computational methods as powerful tools in measuring and understanding binding kinetics.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  adaptive sampling; binding kinetics; drug discovery; molecular dynamics

Mesh:

Year:  2016        PMID: 27492236     DOI: 10.1002/minf.201501018

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  10 in total

1.  Role of Molecular Interactions and Protein Rearrangement in the Dissociation Kinetics of p38α MAP Kinase Type-I/II/III Inhibitors.

Authors:  Wanli You; Chia-En A Chang
Journal:  J Chem Inf Model       Date:  2018-04-16       Impact factor: 4.956

2.  Diffusion tensor optical coherence tomography.

Authors:  Daniel L Marks; Richard L Blackmon; Amy L Oldenburg
Journal:  Phys Med Biol       Date:  2018-01-09       Impact factor: 3.609

Review 3.  Computational membrane biophysics: From ion channel interactions with drugs to cellular function.

Authors:  Williams E Miranda; Van A Ngo; Laura L Perissinotti; Sergei Yu Noskov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-08-26       Impact factor: 3.036

4.  Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding.

Authors:  Jinan Wang; Yinglong Miao
Journal:  J Chem Phys       Date:  2020-10-21       Impact factor: 3.488

5.  Unraveling the Binding, Proton Blockage, and Inhibition of Influenza M2 WT and S31N by Rimantadine Variants.

Authors:  Antonios Drakopoulos; Christina Tzitzoglaki; Kelly McGuire; Anja Hoffmann; Athina Konstantinidi; Dimitrios Kolokouris; Chunlong Ma; Kathrin Freudenberger; Johanna Hutterer; Günter Gauglitz; Jun Wang; Michaela Schmidtke; David D Busath; Antonios Kolocouris
Journal:  ACS Med Chem Lett       Date:  2018-01-29       Impact factor: 4.345

Review 6.  Overview of the detection methods for equilibrium dissociation constant KD of drug-receptor interaction.

Authors:  Weina Ma; Liu Yang; Langchong He
Journal:  J Pharm Anal       Date:  2018-05-05

7.  Supporting the Identification of Novel Fragment-Based Positive Allosteric Modulators Using a Supervised Molecular Dynamics Approach: A Retrospective Analysis Considering the Human A2A Adenosine Receptor as a Key Example.

Authors:  Giuseppe Deganutti; Stefano Moro
Journal:  Molecules       Date:  2017-05-16       Impact factor: 4.411

8.  Binding Ensembles of p53-MDM2 Peptide Inhibitors by Combining Bayesian Inference and Atomistic Simulations.

Authors:  Lijun Lang; Alberto Perez
Journal:  Molecules       Date:  2021-01-02       Impact factor: 4.411

9.  Ligand Gaussian Accelerated Molecular Dynamics (LiGaMD): Characterization of Ligand Binding Thermodynamics and Kinetics.

Authors:  Yinglong Miao; Apurba Bhattarai; Jinan Wang
Journal:  J Chem Theory Comput       Date:  2020-08-07       Impact factor: 6.006

10.  Biomolecular conformational changes and ligand binding: from kinetics to thermodynamics.

Authors:  Yong Wang; João Miguel Martins; Kresten Lindorff-Larsen
Journal:  Chem Sci       Date:  2017-07-12       Impact factor: 9.825

  10 in total

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