Literature DB >> 27485899

Structural insights into the catalysis and regulation of E3 ubiquitin ligases.

Lori Buetow1, Danny T Huang1.   

Abstract

Covalent attachment (conjugation) of one or more ubiquitin molecules to protein substrates governs numerous eukaryotic cellular processes, including apoptosis, cell division and immune responses. Ubiquitylation was originally associated with protein degradation, but it is now clear that ubiquitylation also mediates processes such as protein-protein interactions and cell signalling depending on the type of ubiquitin conjugation. Ubiquitin ligases (E3s) catalyse the final step of ubiquitin conjugation by transferring ubiquitin from ubiquitin-conjugating enzymes (E2s) to substrates. In humans, more than 600 E3s contribute to determining the fates of thousands of substrates; hence, E3s need to be tightly regulated to ensure accurate substrate ubiquitylation. Recent findings illustrate how E3s function on a structural level and how they coordinate with E2s and substrates to meticulously conjugate ubiquitin. Insights regarding the mechanisms of E3 regulation, including structural aspects of their autoinhibition and activation are also emerging.

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Year:  2016        PMID: 27485899      PMCID: PMC6211636          DOI: 10.1038/nrm.2016.91

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  154 in total

1.  RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.

Authors:  Carsten Hoege; Boris Pfander; George-Lucian Moldovan; George Pyrowolakis; Stefan Jentsch
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

2.  Itch WW Domains Inhibit Its E3 Ubiquitin Ligase Activity by Blocking E2-E3 Ligase Trans-thiolation.

Authors:  Christopher Riling; Hari Kamadurai; Suresh Kumar; Claire E O'Leary; Kuen-Phon Wu; Erica E Manion; Mingjie Ying; Brenda A Schulman; Paula M Oliver
Journal:  J Biol Chem       Date:  2015-08-05       Impact factor: 5.157

Review 3.  Nonproteolytic functions of ubiquitin in cell signaling.

Authors:  Zhijian J Chen; Lijun J Sun
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

4.  Control of the activity of WW-HECT domain E3 ubiquitin ligases by NDFIP proteins.

Authors:  Thomas Mund; Hugh R B Pelham
Journal:  EMBO Rep       Date:  2009-04-03       Impact factor: 8.807

5.  E6AP/UBE3A ubiquitin ligase harbors two E2~ubiquitin binding sites.

Authors:  Virginia P Ronchi; Jennifer M Klein; Arthur L Haas
Journal:  J Biol Chem       Date:  2013-02-25       Impact factor: 5.157

Review 6.  RBR E3-ligases at work.

Authors:  Judith J Smit; Titia K Sixma
Journal:  EMBO Rep       Date:  2014-01-27       Impact factor: 8.807

7.  Structure and function of the yeast U-box-containing ubiquitin ligase Ufd2p.

Authors:  Daqi Tu; Wei Li; Yihong Ye; Axel T Brunger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-21       Impact factor: 11.205

8.  Activation of UbcH5c~Ub is the result of a shift in interdomain motions of the conjugate bound to U-box E3 ligase E4B.

Authors:  Sarah E Soss; Rachel E Klevit; Walter J Chazin
Journal:  Biochemistry       Date:  2013-04-15       Impact factor: 3.162

9.  E2 interaction and dimerization in the crystal structure of TRAF6.

Authors:  Qian Yin; Su-Chang Lin; Betty Lamothe; Miao Lu; Yu-Chih Lo; Gregory Hura; Lixin Zheng; Rebecca L Rich; Alejandro D Campos; David G Myszka; Michael J Lenardo; Bryant G Darnay; Hao Wu
Journal:  Nat Struct Mol Biol       Date:  2009-05-24       Impact factor: 15.369

10.  Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP.

Authors:  Benjamin Stieglitz; Rohini R Rana; Marios G Koliopoulos; Aylin C Morris-Davies; Veronique Schaeffer; Evangelos Christodoulou; Steven Howell; Nicholas R Brown; Ivan Dikic; Katrin Rittinger
Journal:  Nature       Date:  2013-10-20       Impact factor: 49.962

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  178 in total

1.  Cullin neddylation may allosterically tune polyubiquitin chain length and topology.

Authors:  Melis Onel; Fidan Sumbul; Jin Liu; Ruth Nussinov; Turkan Haliloglu
Journal:  Biochem J       Date:  2017-02-20       Impact factor: 3.857

2.  TRIM31 regulates chronic inflammation via NF-κB signal pathway to promote invasion and metastasis in colorectal cancer.

Authors:  Haiyu Wang; Lu Yao; Yuda Gong; Bo Zhang
Journal:  Am J Transl Res       Date:  2018-04-15       Impact factor: 4.060

3.  WW domain-mediated regulation and activation of E3 ubiquitin ligase Suppressor of Deltex.

Authors:  Weiyi Yao; Zelin Shan; Aihong Gu; Minjie Fu; Zhifeng Shi; Wenyu Wen
Journal:  J Biol Chem       Date:  2018-09-13       Impact factor: 5.157

4.  A Tunable Brake for HECT Ubiquitin Ligases.

Authors:  Zan Chen; Hanjie Jiang; Wei Xu; Xiaoguang Li; Daniel R Dempsey; Xiangbin Zhang; Peter Devreotes; Cynthia Wolberger; L Mario Amzel; Sandra B Gabelli; Philip A Cole
Journal:  Mol Cell       Date:  2017-05-04       Impact factor: 17.970

Review 5.  Structural basis of generic versus specific E2-RING E3 interactions in protein ubiquitination.

Authors:  Mehmet Gundogdu; Helen Walden
Journal:  Protein Sci       Date:  2019-08-23       Impact factor: 6.725

6.  Allosteric auto-inhibition and activation of the Nedd4 family E3 ligase Itch.

Authors:  Kang Zhu; Zelin Shan; Xing Chen; Yuqun Cai; Lei Cui; Weiyi Yao; Zhen Wang; Pan Shi; Changlin Tian; Jizhong Lou; Yunli Xie; Wenyu Wen
Journal:  EMBO Rep       Date:  2017-07-26       Impact factor: 8.807

Review 7.  Exploitation of the host cell ubiquitin machinery by microbial effector proteins.

Authors:  Yi-Han Lin; Matthias P Machner
Journal:  J Cell Sci       Date:  2017-05-05       Impact factor: 5.285

Review 8.  The MID1 gene product in physiology and disease.

Authors:  Rossella Baldini; Martina Mascaro; Germana Meroni
Journal:  Gene       Date:  2020-04-10       Impact factor: 3.688

9.  Crystal structure of a human ubiquitin E1-ubiquitin complex reveals conserved functional elements essential for activity.

Authors:  Zongyang Lv; Katelyn M Williams; Lingmin Yuan; James H Atkison; Shaun K Olsen
Journal:  J Biol Chem       Date:  2018-10-02       Impact factor: 5.157

Review 10.  Endo-lysosomal sorting of G-protein-coupled receptors by ubiquitin: Diverse pathways for G-protein-coupled receptor destruction and beyond.

Authors:  Michael R Dores; JoAnn Trejo
Journal:  Traffic       Date:  2018-11-18       Impact factor: 6.215

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