Literature DB >> 27482511

Modulation of LINE-1 Retrotransposition by a Human SAMHD1 Polymorphism.

Tommy E White1, Alberto Brandariz-Nuñez1, Kyudong Han2, Sara L Sawyer3, Baek Kim4, Felipe Diaz-Griffero1.   

Abstract

The HIV-1 restriction factor SAMHD1 has the ability to negatively modulate retrotransposition of the long interspersed element 1(LINE-1). By exploring the ability of human SAMHD1 polymorphisms to inhibit LINE-1, we found that the single nucleotide polymorphism S33A present in the Korean population lose the ability to inhibit LINE-1 retrotransposition. Because SAMHD1 residue S33 is phosphorylated in human cycling and non-cycling cells, we demonstrated that SAMHD1 requires to be either phosphorylated on position 33 or to contain a bulky residue in order to inhibit LINE-1 retrotransposition. Therefore this unique mutation uncouples functions in this important restriction factor.

Entities:  

Keywords:  HIV-1; LINE-1; SAMHD1; SNPs; restrcition; retrotransposition

Year:  2016        PMID: 27482511      PMCID: PMC4959807          DOI: 10.1016/j.virep.2016.06.001

Source DB:  PubMed          Journal:  Virol Rep        ISSN: 2214-6695


  36 in total

1.  Polymorphisms of the SAMHD1 gene are not associated with the infection and natural control of HIV type 1 in Europeans and African-Americans.

Authors:  Sirena Coon; Danxin Wang; Li Wu
Journal:  AIDS Res Hum Retroviruses       Date:  2012-06-01       Impact factor: 2.205

2.  SAMHD1 restricts HIV-1 infection in resting CD4(+) T cells.

Authors:  Hanna-Mari Baldauf; Xiaoyu Pan; Elina Erikson; Sarah Schmidt; Waaqo Daddacha; Manja Burggraf; Kristina Schenkova; Ina Ambiel; Guido Wabnitz; Thomas Gramberg; Sylvia Panitz; Egbert Flory; Nathaniel R Landau; Serkan Sertel; Frank Rutsch; Felix Lasitschka; Baek Kim; Renate König; Oliver T Fackler; Oliver T Keppler
Journal:  Nat Med       Date:  2012-11       Impact factor: 53.440

3.  SAMHD1 is a single-stranded nucleic acid binding protein with no active site-associated nuclease activity.

Authors:  Kyle J Seamon; Zhiqiang Sun; Luda S Shlyakhtenko; Yuri L Lyubchenko; James T Stivers
Journal:  Nucleic Acids Res       Date:  2015-06-22       Impact factor: 16.971

4.  The Vpx lentiviral accessory protein targets SAMHD1 for degradation in the nucleus.

Authors:  Henning Hofmann; Eric C Logue; Nicolin Bloch; Waaqo Daddacha; Sylvie B Polsky; Megan L Schultz; Baek Kim; Nathaniel R Landau
Journal:  J Virol       Date:  2012-09-12       Impact factor: 5.103

5.  The retroviral restriction ability of SAMHD1, but not its deoxynucleotide triphosphohydrolase activity, is regulated by phosphorylation.

Authors:  Tommy E White; Alberto Brandariz-Nuñez; Jose Carlos Valle-Casuso; Sarah Amie; Laura Anh Nguyen; Baek Kim; Marina Tuzova; Felipe Diaz-Griffero
Journal:  Cell Host Microbe       Date:  2013-04-17       Impact factor: 21.023

6.  Effects of human SAMHD1 polymorphisms on HIV-1 susceptibility.

Authors:  Tommy E White; Alberto Brandariz-Nuñez; Jose Carlos Valle-Casuso; Caitlin Knowlton; Baek Kim; Sara L Sawyer; Felipe Diaz-Griffero
Journal:  Virology       Date:  2014-05-29       Impact factor: 3.616

7.  A highly annotated whole-genome sequence of a Korean individual.

Authors:  Jong-Il Kim; Young Seok Ju; Hansoo Park; Sheehyun Kim; Seonwook Lee; Jae-Hyuk Yi; Joann Mudge; Neil A Miller; Dongwan Hong; Callum J Bell; Hye-Sun Kim; In-Soon Chung; Woo-Chung Lee; Ji-Sun Lee; Seung-Hyun Seo; Ji-Young Yun; Hyun Nyun Woo; Heewook Lee; Dongwhan Suh; Seungbok Lee; Hyun-Jin Kim; Maryam Yavartanoo; Minhye Kwak; Ying Zheng; Mi Kyeong Lee; Hyunjun Park; Jeong Yeon Kim; Omer Gokcumen; Ryan E Mills; Alexander Wait Zaranek; Joseph Thakuria; Xiaodi Wu; Ryan W Kim; Jim J Huntley; Shujun Luo; Gary P Schroth; Thomas D Wu; HyeRan Kim; Kap-Seok Yang; Woong-Yang Park; Hyungtae Kim; George M Church; Charles Lee; Stephen F Kingsmore; Jeong-Sun Seo
Journal:  Nature       Date:  2009-07-08       Impact factor: 49.962

8.  HIV-1 restriction factor SAMHD1 is a deoxynucleoside triphosphate triphosphohydrolase.

Authors:  David C Goldstone; Valerie Ennis-Adeniran; Joseph J Hedden; Harriet C T Groom; Gillian I Rice; Evangelos Christodoulou; Philip A Walker; Geoff Kelly; Lesley F Haire; Melvyn W Yap; Luiz Pedro S de Carvalho; Jonathan P Stoye; Yanick J Crow; Ian A Taylor; Michelle Webb
Journal:  Nature       Date:  2011-11-06       Impact factor: 49.962

9.  Tetramerization of SAMHD1 is required for biological activity and inhibition of HIV infection.

Authors:  Junpeng Yan; Sarabpreet Kaur; Maria DeLucia; Caili Hao; Jennifer Mehrens; Chuanping Wang; Marcin Golczak; Krzysztof Palczewski; Angela M Gronenborn; Jinwoo Ahn; Jacek Skowronski
Journal:  J Biol Chem       Date:  2013-02-20       Impact factor: 5.157

10.  Contribution of oligomerization to the anti-HIV-1 properties of SAMHD1.

Authors:  Alberto Brandariz-Nuñez; Jose Carlos Valle-Casuso; Tommy E White; Laura Nguyen; Akash Bhattacharya; Zhonghua Wang; Borries Demeler; Sarah Amie; Caitlin Knowlton; Baek Kim; Dmitri N Ivanov; Felipe Diaz-Griffero
Journal:  Retrovirology       Date:  2013-11-12       Impact factor: 4.602

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  5 in total

1.  SAMHD1 deficient human monocytes autonomously trigger type I interferon.

Authors:  Alicia Martinez-Lopez; Marta Martin-Fernandez; Sofija Buta; Baek Kim; Dusan Bogunovic; Felipe Diaz-Griffero
Journal:  Mol Immunol       Date:  2018-08-09       Impact factor: 4.407

2.  The Simons Genome Diversity Project: A Global Analysis of Mobile Element Diversity.

Authors:  W Scott Watkins; Julie E Feusier; Jainy Thomas; Clement Goubert; Swapon Mallick; Lynn B Jorde
Journal:  Genome Biol Evol       Date:  2020-06-01       Impact factor: 3.416

3.  Nucleic acid binding by SAMHD1 contributes to the antiretroviral activity and is enhanced by the GpsN modification.

Authors:  Akash Bhattacharya; Mirjana Persaud; Corey H Yu; Alexander B Taylor; Zhonghua Wang; Angel Bulnes-Ramos; Joella Xu; Anastasia Selyutina; Alicia Martinez-Lopez; Kristin Cano; Borries Demeler; Baek Kim; Stephen C Hardies; Felipe Diaz-Griffero; Dmitri N Ivanov
Journal:  Nat Commun       Date:  2021-02-02       Impact factor: 17.694

Review 4.  Factors Regulating the Activity of LINE1 Retrotransposons.

Authors:  Maria Sergeevna Protasova; Tatiana Vladimirovna Andreeva; Evgeny Ivanovich Rogaev
Journal:  Genes (Basel)       Date:  2021-09-30       Impact factor: 4.096

Review 5.  SAMHD1 Functions and Human Diseases.

Authors:  Si'Ana A Coggins; Bijan Mahboubi; Raymond F Schinazi; Baek Kim
Journal:  Viruses       Date:  2020-03-31       Impact factor: 5.048

  5 in total

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