Literature DB >> 27471796

Drought stress differentially regulates the expression of small open reading frames (sORFs) in Arabidopsis roots and shoots.

Sultana Rasheed1,2, Khurram Bashir1, Kentaro Nakaminami1, Kousuke Hanada3,4, Akihiro Matsui1, Motoaki Seki1,2,4.   

Abstract

Characterizing the molecular mechanisms governing the response of plant roots and shoots to drought stress could aid the development of strategies aiming to ameliorate drought stress. Small open reading frames (sORFs), putatively encoding small peptides, may play a significant role in the response to different abiotic stresses. Microarray analyses revealed that after 5, 7 and 9 d of a drought treatment, 2, 77, and 104 sORFs were up-regulated in roots, respectively; while the number of upregulated sORFs in shoots was 12, 45, and 158, respectively. RT-qPCR analysis confirmed the up-regulated expression of ATRIKEN29196 and ATRIKEN32280 specifically in roots. The identified upregulated sORFs, particularly those in roots, may contribute to drought stress tolerance.

Entities:  

Keywords:  Abiotic stresses; Arabidopsis thaliana; drought; microarray; small open reading frames

Mesh：

Substances：

Year:  2016        PMID： 27471796      PMCID： PMC5022413          DOI： 10.1080/15592324.2016.1215792

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN： 1559-2316


  28 in total

1.  Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.

Authors:  Motoaki Seki; Mari Narusaka; Junko Ishida; Tokihiko Nanjo; Miki Fujita; Youko Oono; Asako Kamiya; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Teruaki Taji; Kazuko Yamaguchi-Shinozaki; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki; Kazuo Shinozaki
Journal:  Plant J       Date:  2002-08       Impact factor: 6.417

Review 2.  Engineering drought tolerance in plants: discovering and tailoring genes to unlock the future.

Authors:  Taishi Umezawa; Miki Fujita; Yasunari Fujita; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki
Journal:  Curr Opin Biotechnol       Date:  2006-02-21       Impact factor: 9.740

Review 3.  Gene duplication and evolutionary novelty in plants.

Authors:  Lex E Flagel; Jonathan F Wendel
Journal:  New Phytol       Date:  2009-06-23       Impact factor: 10.151

Review 4.  Peptide signaling in plant development.

Authors:  Leron Katsir; Kelli A Davies; Dominique C Bergmann; Thomas Laux
Journal:  Curr Biol       Date:  2011-05-10       Impact factor: 10.834

Review 5.  Gene duplication as a mechanism of genomic adaptation to a changing environment.

Authors:  Fyodor A Kondrashov
Journal:  Proc Biol Sci       Date:  2012-09-12       Impact factor: 5.349

6.  Detailed analysis of putative genes encoding small proteins in legume genomes.

Authors:  Gabriel Guillén; Claudia Díaz-Camino; Carlos A Loyola-Torres; Rosaura Aparicio-Fabre; Alejandrina Hernández-López; Mauricio Díaz-Sánchez; Federico Sanchez
Journal:  Front Plant Sci       Date:  2013-06-20       Impact factor: 5.753

7.  Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis.

Authors:  Ulrike Bechtold; Christopher A Penfold; Dafyd J Jenkins; Roxane Legaie; Jonathan D Moore; Tracy Lawson; Jack S A Matthews; Silvere R M Vialet-Chabrand; Laura Baxter; Sunitha Subramaniam; Richard Hickman; Hannah Florance; Christine Sambles; Deborah L Salmon; Regina Feil; Laura Bowden; Claire Hill; Neil R Baker; John E Lunn; Bärbel Finkenstädt; Andrew Mead; Vicky Buchanan-Wollaston; Jim Beynon; David A Rand; David L Wild; Katherine J Denby; Sascha Ott; Nicholas Smirnoff; Philip M Mullineaux
Journal:  Plant Cell       Date:  2016-02-03       Impact factor: 11.277

8.  Transcriptomic analysis of rice in response to iron deficiency and excess.

Authors:  Khurram Bashir; Kousuke Hanada; Minami Shimizu; Motoaki Seki; Hiromi Nakanishi; Naoko K Nishizawa
Journal:  Rice (N Y)       Date:  2014-09-12       Impact factor: 4.783

9.  sORFs.org: a repository of small ORFs identified by ribosome profiling.

Authors:  Volodimir Olexiouk; Jeroen Crappé; Steven Verbruggen; Kenneth Verhegen; Lennart Martens; Gerben Menschaert
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

10.  Transcriptomic Analysis of Soil-Grown Arabidopsis thaliana Roots and Shoots in Response to a Drought Stress.

Authors:  Sultana Rasheed; Khurram Bashir; Akihiro Matsui; Maho Tanaka; Motoaki Seki
Journal:  Front Plant Sci       Date:  2016-02-23       Impact factor: 5.753
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  5 in total

Review 1.  Small open reading frames in plant research: from prediction to functional characterization.

Authors:  Sheue Ni Ong; Boon Chin Tan; Aisyafaznim Al-Idrus; Chee How Teo
Journal:  3 Biotech       Date:  2022-02-24       Impact factor: 2.406

Review 2.  Multi-Omics Techniques for Soybean Molecular Breeding.

Authors:  Pan Cao; Ying Zhao; Fengjiao Wu; Dawei Xin; Chunyan Liu; Xiaoxia Wu; Jian Lv; Qingshan Chen; Zhaoming Qi
Journal:  Int J Mol Sci       Date:  2022-04-30       Impact factor: 6.208

Review 3.  Recent advances in the characterization of plant transcriptomes in response to drought, salinity, heat, and cold stress.

Authors:  Khurram Bashir; Akihiro Matsui; Sultana Rasheed; Motoaki Seki
Journal:  F1000Res       Date:  2019-05-14

4.  Distinct types of short open reading frames are translated in plant cells.

Authors:  Igor Fesenko; Ilya Kirov; Andrey Kniazev; Regina Khazigaleeva; Vassili Lazarev; Daria Kharlampieva; Ekaterina Grafskaia; Viktor Zgoda; Ivan Butenko; Georgy Arapidi; Anna Mamaeva; Vadim Ivanov; Vadim Govorun
Journal:  Genome Res       Date:  2019-08-06       Impact factor: 9.043

5.  The modulation of acetic acid pathway genes in Arabidopsis improves survival under drought stress.

Authors:  Sultana Rasheed; Khurram Bashir; Jong-Myong Kim; Marina Ando; Maho Tanaka; Motoaki Seki
Journal:  Sci Rep       Date:  2018-05-18       Impact factor: 4.379
  5 in total

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