Literature DB >> 27467875

Chemoinformatics as a Theoretical Chemistry Discipline.

Alexandre Varnek1, Igor I Baskin2.   

Abstract

Here, chemoinformatics is considered as a theoretical chemistry discipline complementary to quantum chemistry and force-field molecular modeling. These three fields are compared with respect to molecular representation, inference mechanisms, basic concepts and application areas. A chemical space, a fundamental concept of chemoinformatics, is considered with respect to complex relations between chemical objects (graphs or descriptor vectors). Statistical Learning Theory, one of the main mathematical approaches in structure-property modeling, is briefly reviewed. Links between chemoinformatics and its "sister" fields - machine learning, chemometrics and bioinformatics are discussed.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Chemical space; Chemoinformatics; Computational learning theory; Similarity

Year:  2011        PMID: 27467875     DOI: 10.1002/minf.201000100

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  11 in total

1.  Predictive cartography of metal binders using generative topographic mapping.

Authors:  Igor I Baskin; Vitaly P Solov'ev; Alexander A Bagatur'yants; Alexandre Varnek
Journal:  J Comput Aided Mol Des       Date:  2017-07-07       Impact factor: 3.686

2.  Advanced Multidimensional Separations in Mass Spectrometry: Navigating the Big Data Deluge.

Authors:  Jody C May; John A McLean
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2016-03-30       Impact factor: 10.745

3.  Continuous indicator fields: a novel universal type of molecular fields.

Authors:  Gleb V Sitnikov; Nelly I Zhokhova; Yury A Ustynyuk; Alexandre Varnek; Igor I Baskin
Journal:  J Comput Aided Mol Des       Date:  2014-12-02       Impact factor: 3.686

Review 4.  Machine learning in chemoinformatics and drug discovery.

Authors:  Yu-Chen Lo; Stefano E Rensi; Wen Torng; Russ B Altman
Journal:  Drug Discov Today       Date:  2018-05-08       Impact factor: 7.851

Review 5.  Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science.

Authors:  Piotr Minkiewicz; Małgorzata Darewicz; Anna Iwaniak; Justyna Bucholska; Piotr Starowicz; Emilia Czyrko
Journal:  Int J Mol Sci       Date:  2016-12-06       Impact factor: 5.923

6.  PubChem chemical structure standardization.

Authors:  Volker D Hähnke; Sunghwan Kim; Evan E Bolton
Journal:  J Cheminform       Date:  2018-08-10       Impact factor: 5.514

Review 7.  Molecular representations in AI-driven drug discovery: a review and practical guide.

Authors:  Laurianne David; Amol Thakkar; Rocío Mercado; Ola Engkvist
Journal:  J Cheminform       Date:  2020-09-17       Impact factor: 5.514

Review 8.  Melanins as Sustainable Resources for Advanced Biotechnological Applications.

Authors:  Hanaa A Galeb; Emma L Wilkinson; Alison F Stowell; Hungyen Lin; Samuel T Murphy; Pierre L Martin-Hirsch; Richard L Mort; Adam M Taylor; John G Hardy
Journal:  Glob Chall       Date:  2020-11-25

9.  Rationality over fashion and hype in drug design.

Authors:  José L Medina-Franco; Karina Martinez-Mayorga; Eli Fernández-de Gortari; Johannes Kirchmair; Jürgen Bajorath
Journal:  F1000Res       Date:  2021-05-18

10.  Analysis and Comparison of Vector Space and Metric Space Representations in QSAR Modeling.

Authors:  Samina Kausar; Andre O Falcao
Journal:  Molecules       Date:  2019-04-30       Impact factor: 4.411

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