Literature DB >> 27463332

In Silico Receptorome Screening of Antipsychotic Drugs.

David Vidal1, Jordi Mestres2.   

Abstract

The recent availability of a complete interaction matrix between 13 antipsychotic drugs and 34 protein targets (Roth et al. Nat. Rev. Drug Discov. 2004, 3, 353-359) allows to assess the performance of computational methods on their ability to anticipate the entire affinity profile of drugs across multiple targets. The analyses reveal that our current implementations, based on the similarity of drugs against a reference set of small molecules for which pharmacological data is available in the public domain, are able to predict 65 % of the 442 affinities within 1-log unit error, with a level of precision above 92 %. In spite of the relatively small scale of this validation study, the results are indicative that in silico receptorome screening of drugs offers an efficient and cost-effective complement to in vitro screening.
Copyright © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Chemical biology; Chemogenomics; Drug repurposing; High-throughput screening; Polypharmacology

Year:  2010        PMID: 27463332     DOI: 10.1002/minf.201000055

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  10 in total

1.  A chemocentric approach to the identification of cancer targets.

Authors:  Beáta Flachner; Zsolt Lörincz; Angelo Carotti; Orazio Nicolotti; Praveena Kuchipudi; Nikita Remez; Ferran Sanz; József Tóvári; Miklós J Szabó; Béla Bertók; Sándor Cseh; Jordi Mestres; György Dormán
Journal:  PLoS One       Date:  2012-04-25       Impact factor: 3.240

2.  Automated design of ligands to polypharmacological profiles.

Authors:  Jérémy Besnard; Gian Filippo Ruda; Vincent Setola; Keren Abecassis; Ramona M Rodriguiz; Xi-Ping Huang; Suzanne Norval; Maria F Sassano; Antony I Shin; Lauren A Webster; Frederick R C Simeons; Laste Stojanovski; Annik Prat; Nabil G Seidah; Daniel B Constam; G Richard Bickerton; Kevin D Read; William C Wetsel; Ian H Gilbert; Bryan L Roth; Andrew L Hopkins
Journal:  Nature       Date:  2012-12-13       Impact factor: 49.962

3.  Accurate and efficient target prediction using a potency-sensitive influence-relevance voter.

Authors:  Alessandro Lusci; Michael Browning; David Fooshee; Joshua Swamidass; Pierre Baldi
Journal:  J Cheminform       Date:  2015-12-29       Impact factor: 5.514

4.  Discovery of a New Class of Cathepsin K Inhibitors in Rhizoma Drynariae as Potential Candidates for the Treatment of Osteoporosis.

Authors:  Zuo-Cheng Qiu; Xiao-Li Dong; Yi Dai; Gao-Keng Xiao; Xin-Luan Wang; Ka-Chun Wong; Man-Sau Wong; Xin-Sheng Yao
Journal:  Int J Mol Sci       Date:  2016-12-16       Impact factor: 5.923

5.  The Varieties of the Psychedelic Experience: A Preliminary Study of the Association Between the Reported Subjective Effects and the Binding Affinity Profiles of Substituted Phenethylamines and Tryptamines.

Authors:  Federico Zamberlan; Camila Sanz; Rocío Martínez Vivot; Carla Pallavicini; Fire Erowid; Earth Erowid; Enzo Tagliazucchi
Journal:  Front Integr Neurosci       Date:  2018-11-08

6.  Closing the Gap Between Therapeutic Use and Mode of Action in Remedial Herbs.

Authors:  Joaquim Olivés; Jordi Mestres
Journal:  Front Pharmacol       Date:  2019-10-03       Impact factor: 5.810

7.  Evaluating kratom alkaloids using PHASE.

Authors:  Christopher R Ellis; Rebecca Racz; Naomi L Kruhlak; Marlene T Kim; Alexey V Zakharov; Noel Southall; Edward G Hawkins; Keith Burkhart; David G Strauss; Lidiya Stavitskaya
Journal:  PLoS One       Date:  2020-03-03       Impact factor: 3.240

8.  Trips and neurotransmitters: Discovering principled patterns across 6850 hallucinogenic experiences.

Authors:  Galen Ballentine; Samuel Freesun Friedman; Danilo Bzdok
Journal:  Sci Adv       Date:  2022-03-16       Impact factor: 14.136

9.  Assessing drug target association using semantic linked data.

Authors:  Bin Chen; Ying Ding; David J Wild
Journal:  PLoS Comput Biol       Date:  2012-07-05       Impact factor: 4.475

10.  Prediction of the P. falciparum target space relevant to malaria drug discovery.

Authors:  Andreas Spitzmüller; Jordi Mestres
Journal:  PLoS Comput Biol       Date:  2013-10-17       Impact factor: 4.475

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.