Literature DB >> 27460580

Rufibacter soli sp. nov., a Bacterium Isolated from Soil.

Jun Hyeong Jang1, Dongwook Lee1, Seho Cha1, Sora Lim1, Dahye Yang1, Taegun Seo2.   

Abstract

A gram-negative bacterium, designated FJY1(T), was isolated from a soil sample obtained from a university campus in South Korea. Examination showed that FJY1(T) was red-pigmented, aerobic, motile, and composed of nonspore-forming rods. This strain grew in a temperature range of 15-37 °C and a pH range of 7-9. Based on 16S rRNA gene sequence similarity, strain FJY1(T) was most closely related to Rufibacter roseus H359(T) and Rufibacter tibetensis 1351(T), with sequence similarities of 95.98 and 95.46 %, respectively. Its major cellular fatty acids were iso-C15:0 (18.16 %) and summed feature 4 (C17:1 iso I and C17:1 anteiso B; 15.17 %). The DNA G+C content of FJY1(T) was 49.7 mol%; its predominant quinone was MK-7; and its major polar lipid was phosphatidylethanolamine. Phylogenetic analysis and analysis of its physiological and biochemical characteristics indicated that this isolate constituted a novel species, for which we propose the name Rufibacter soli sp. nov., with the type strain FJY1(T) (=KCTC 42815(T) = JCM 31024(T)).

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27460580     DOI: 10.1007/s00284-016-1105-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  10 in total

1.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.

Authors:  Ok-Sun Kim; Yong-Joon Cho; Kihyun Lee; Seok-Hwan Yoon; Mincheol Kim; Hyunsoo Na; Sang-Cheol Park; Yoon Seong Jeon; Jae-Hak Lee; Hana Yi; Sungho Won; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-25       Impact factor: 2.747

2.  16S ribosomal DNA amplification for phylogenetic study.

Authors:  W G Weisburg; S M Barns; D A Pelletier; D J Lane
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Rufibacter tibetensis gen. nov., sp. nov., a novel member of the family Cytophagaceae isolated from soil.

Authors:  Gulsimay Abaydulla; Xuesong Luo; Jingjing Shi; Fang Peng; Ming Liu; Yaqiong Wang; Jun Dai; Chengxiang Fang
Journal:  Antonie Van Leeuwenhoek       Date:  2011-12-29       Impact factor: 2.271

8.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

9.  Nonstaining (KOH) method for determination of gram reactions of marine bacteria.

Authors:  J D Buck
Journal:  Appl Environ Microbiol       Date:  1982-10       Impact factor: 4.792

10.  Rufibacter roseus sp. nov., isolated from radiation-polluted soil.

Authors:  Zhi-Dong Zhang; Mei-Ying Gu; Jing Zhu; Shan-Hui Li; Li-Juan Zhang; Yu-Qing Xie; Yu-Hu Shi; Wei Wang; Wen-Jun Li
Journal:  Int J Syst Evol Microbiol       Date:  2015-02-23       Impact factor: 2.747

  10 in total
  1 in total

1.  Pelagibacterium limicola sp. nov., isolated from a soda alkali-saline soil.

Authors:  Wei Wei; Kaiyan Xing; Kaili Wang; Xinyu Hu; Xin Zhang; Fan Yang; Shujing Yang; Henglin Cui; Shenkui Liu; Lin Zhu
Journal:  Arch Microbiol       Date:  2021-03-14       Impact factor: 2.552

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.