Literature DB >> 27454737

Genetic improvement of tomato by targeted control of fruit softening.

Selman Uluisik1, Natalie H Chapman1, Rebecca Smith1, Mervin Poole2, Gary Adams1,3, Richard B Gillis1,3, Tabot M D Besong1, Judith Sheldon4, Suzy Stiegelmeyer5, Laura Perez6, Nurul Samsulrizal1, Duoduo Wang1, Ian D Fisk1, Ni Yang1, Charles Baxter4, Daniel Rickett4, Rupert Fray1, Barbara Blanco-Ulate7, Ann L T Powell7, Stephen E Harding1, Jim Craigon1, Jocelyn K C Rose8, Eric A Fich8, Li Sun9, David S Domozych9, Paul D Fraser6, Gregory A Tucker1, Don Grierson1, Graham B Seymour1.   

Abstract

Controlling the rate of softening to extend shelf life was a key target for researchers engineering genetically modified (GM) tomatoes in the 1990s, but only modest improvements were achieved. Hybrids grown nowadays contain 'non-ripening mutations' that slow ripening and improve shelf life, but adversely affect flavor and color. We report substantial, targeted control of tomato softening, without affecting other aspects of ripening, by silencing a gene encoding a pectate lyase.

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Year:  2016        PMID: 27454737     DOI: 10.1038/nbt.3602

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  35 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Tracking developmentally regulated post-synthetic processing of homogalacturonan and chitin using reciprocal oligosaccharide probes.

Authors:  Jozef Mravec; Stjepan K Kračun; Maja G Rydahl; Bjørge Westereng; Fabien Miart; Mads H Clausen; Jonatan U Fangel; Mathilde Daugaard; Pierre Van Cutsem; Henrik H De Fine Licht; Herman Höfte; Frederikke G Malinovsky; David S Domozych; William G T Willats
Journal:  Development       Date:  2014-11-13       Impact factor: 6.868

Review 3.  Chemical derivatization and mass spectral libraries in metabolic profiling by GC/MS and LC/MS/MS.

Authors:  John M Halket; Daniel Waterman; Anna M Przyborowska; Raj K P Patel; Paul D Fraser; Peter M Bramley
Journal:  J Exp Bot       Date:  2004-12-23       Impact factor: 6.992

4.  The structure and biochemistry of charophycean cell walls: I. Pectins of Penium margaritaceum.

Authors:  D S Domozych; A Serfis; S N Kiemle; M R Gretz
Journal:  Protoplasma       Date:  2006-11-21       Impact factor: 3.356

5.  Inheritance and effect on ripening of antisense polygalacturonase genes in transgenic tomatoes.

Authors:  C J Smith; C F Watson; P C Morris; C R Bird; G B Seymour; J E Gray; C Arnold; G A Tucker; W Schuch; S Harding
Journal:  Plant Mol Biol       Date:  1990-03       Impact factor: 4.076

6.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

7.  New method for quantitative determination of uronic acids.

Authors:  N Blumenkrantz; G Asboe-Hansen
Journal:  Anal Biochem       Date:  1973-08       Impact factor: 3.365

8.  Reduction of polygalacturonase activity in tomato fruit by antisense RNA.

Authors:  R E Sheehy; M Kramer; W R Hiatt
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

9.  High-resolution mapping of a fruit firmness-related quantitative trait locus in tomato reveals epistatic interactions associated with a complex combinatorial locus.

Authors:  Natalie H Chapman; Julien Bonnet; Laurent Grivet; James Lynn; Neil Graham; Rebecca Smith; Guiping Sun; Peter G Walley; Mervin Poole; Mathilde Causse; Graham J King; Charles Baxter; Graham B Seymour
Journal:  Plant Physiol       Date:  2012-06-08       Impact factor: 8.340

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  62 in total

1.  Corrigendum: Genetic improvement of tomato by targeted control of fruit softening.

Authors:  Selman Uluisik; Natalie H Chapman; Rebecca Smith; Mervin Poole; Gary Adams; Richard B Gillis; Tabot M D Besong; Judith Sheldon; Suzy Stiegelmeyer; Laura Perez; Nurul Samsulrizal; Duoduo Wang; Ian D Fisk; Ni Yang; Charles Baxter; Daniel Rickett; Rupert Fray; Barbara Blanco-Ulate; Ann L T Powell; Stephen E Harding; Jim Craigon; Jocelyn K C Rose; Eric A Fich; Li Sun; David S Domozych; Paul D Fraser; Gregory A Tucker; Don Grierson; Graham B Seymour
Journal:  Nat Biotechnol       Date:  2016-10-11       Impact factor: 54.908

2.  Transcriptome Analysis Identifies a Zinc Finger Protein Regulating Starch Degradation in Kiwifruit.

Authors:  Ai-di Zhang; Wen-Qiu Wang; Yang Tong; Ming-Jun Li; Donald Grierson; Ian Ferguson; Kun-Song Chen; Xue-Ren Yin
Journal:  Plant Physiol       Date:  2018-08-22       Impact factor: 8.340

3.  Pectin Methylesterases Modulate Plant Homogalacturonan Status in Defenses against the Aphid Myzus persicae.

Authors:  Christian Silva-Sanzana; Jonathan Celiz-Balboa; Elisa Garzo; Susan E Marcus; Juan Pablo Parra-Rojas; Barbara Rojas; Patricio Olmedo; Miguel A Rubilar; Ignacio Rios; Rodrigo A Chorbadjian; Alberto Fereres; Paul Knox; Susana Saez-Aguayo; Francisca Blanco-Herrera
Journal:  Plant Cell       Date:  2019-05-24       Impact factor: 11.277

4.  METHYLTRANSFERASE1 and Ripening Modulate Vivipary during Tomato Fruit Development.

Authors:  Mengqin Yao; Weiwei Chen; Junhua Kong; Xinlian Zhang; Nongnong Shi; Silin Zhong; Ping Ma; Philippe Gallusci; Stephen Jackson; Yule Liu; Yiguo Hong
Journal:  Plant Physiol       Date:  2020-06-05       Impact factor: 8.340

5.  Characterization of CRISPR Mutants Targeting Genes Modulating Pectin Degradation in Ripening Tomato.

Authors:  Duoduo Wang; Nurul H Samsulrizal; Cheng Yan; Natalie S Allcock; Jim Craigon; Barbara Blanco-Ulate; Isabel Ortega-Salazar; Susan E Marcus; Hassan Moeiniyan Bagheri; Laura Perez Fons; Paul D Fraser; Timothy Foster; Rupert Fray; J Paul Knox; Graham B Seymour
Journal:  Plant Physiol       Date:  2018-11-20       Impact factor: 8.340

6.  Allelic Mutations in the Ripening -Inhibitor Locus Generate Extensive Variation in Tomato Ripening.

Authors:  Yasuhiro Ito; Yasuyo Sekiyama; Hiroko Nakayama; Ayako Nishizawa-Yokoi; Masaki Endo; Yoko Shima; Nobutaka Nakamura; Eiichi Kotake-Nara; Susumu Kawasaki; Sakiko Hirose; Seiichi Toki
Journal:  Plant Physiol       Date:  2020-02-24       Impact factor: 8.340

7.  Transcriptome analysis of acerola fruit ripening: insights into ascorbate, ethylene, respiration, and softening metabolisms.

Authors:  Clesivan Pereira Dos Santos; Mathias Coelho Batista; Kátia Daniella da Cruz Saraiva; André Luiz Maia Roque; Rafael de Souza Miranda; Lorena Mara Alexandre E Silva; Carlos Farley Herbster Moura; Elenilson Godoy Alves Filho; Kirley Marques Canuto; José Hélio Costa
Journal:  Plant Mol Biol       Date:  2019-07-23       Impact factor: 4.076

8.  Mapping and expression of genes associated with raspberry fruit ripening and softening.

Authors:  Craig G Simpson; Danny W Cullen; Christine A Hackett; Kay Smith; Paul D Hallett; Jim McNicol; Mary Woodhead; Julie Graham
Journal:  Theor Appl Genet       Date:  2016-12-09       Impact factor: 5.699

9.  A diverse member of the fungal Avr4 effector family interacts with de-esterified pectin in plant cell walls to disrupt their integrity.

Authors:  Li-Hung Chen; Stjepan K Kračun; Karen S Nissen; Jozef Mravec; Bodil Jørgensen; John Labavitch; Ioannis Stergiopoulos
Journal:  Sci Adv       Date:  2021-05-07       Impact factor: 14.136

Review 10.  Advances in application of genome editing in tomato and recent development of genome editing technology.

Authors:  Xuehan Xia; Xinhua Cheng; Rui Li; Juanni Yao; Zhengguo Li; Yulin Cheng
Journal:  Theor Appl Genet       Date:  2021-06-02       Impact factor: 5.574

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