| Literature DB >> 27454606 |
Yasushi Suzuki1, Takato Odagiri1, Masato Tashiro1, Eri Nobusawa1.
Abstract
In 2013, the first case ofEntities:
Mesh:
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Year: 2016 PMID: 27454606 PMCID: PMC4959774 DOI: 10.1371/journal.pone.0160040
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
The gene constellation of the 6:2 reassortant viruses created in this study.
| Virus | Viral origin of each segment | Reference | ||
|---|---|---|---|---|
| HA | NA | Other segments | ||
| NIIDRG-10C | Anhui/1 | Anhui/1 (EPI439509) | hg-PR8 | This study |
| NIIDRG-10 | Anhui/1 (EPI439507) | Anhui/1 (EPI439509) | Egg-grown PR8 | Nakamura et al. [ |
| NIIDRG-10.1C | Anhui/1 (EPI486492) | Anhui/1 (EPI439509) | hg-PR8 | This study |
| NIIDRG-10.1 | Anhui/1 (EPI486492) | Anhui/1 (EPI439509) | Egg-grown PR8 | Nakamura et al. [ |
a Anhui/1 = A/Anhui/1/2013(H7N9).
b Accession number of Global Initiative on Sharing Avian Influenza Data (GISAID EpiFlu database) for each gene.
Fig 1Growth capacities of PR8 viruses in NIID-MDCK cells.
Replication kinetics of original PR8 (org-PR8), the passage-10 virus (P10), hg-PR8 and rg-hg-PR8 were compared in NIID-MDCK cells. NIID-MDCK cells were inoculated with the respective viruses at an m.o.i. of 0.0001. The supernatants were collected at 24, 48, and 72 hpi, and the virus titers were determined in a plaque formation assay. The vertical axis shows the mean PFUs ± SD at each time point for three or more independent experiments.
Amino acid substitutions during passages of the original PR8 virus in NIID-MDCK cells.
| Segment | Amino acid position | Amino acid residue at each position of the respective virus | ||
|---|---|---|---|---|
| original PR8 | Passage-10 | hg-PR8 | ||
| PB2 | 701 | D | N | N |
| PB1 | 456 | H | N | N |
| PA | 44 | V | I | I |
| PA | 66 | G | D | D |
| NA | 247 | K | R | R |
| M1 | 137 | A | A | T |
| NS2 | 25 | S | S | L |
Fig 2Gene constellations and the growth capacities of the reassortants between org-PR8 and hg-PR8 viruses.
The gene constellations of org-PR8, P10, hg-PR8 and reassortant viruses between org-PR8 and hg-PR8 are indicated by black and white squares. Black squares indicate gene segments containing non-synonymous mutations compared with the sequences of the corresponding segment of org-PR8. NIID-MDCK cells were inoculated with these viruses at an m.o.i. of 0.0001. The peak virus titers were determined in a plaque formation assay. Significant differences in the peak virus titers were assessed with Bonferroni’s multiple-comparison test. (*p<0.01 from org-PR8)
Fig 3Comparison of the growth capacities between the reassortants in NIID-MDCK cells.
The growth kinetics of NIIDRG-10.1C, NIIDRG-10.1, NIIDRG-10C and NIIDRG-10 in NIID-MDCK cells were determined. NIID-MDCK cells were inoculated with the respective viruses at an m.o.i. of 0.0001. The supernatants were collected at 24, 48, and 72 hpi, and the virus titers were determined in a plaque formation assay. The vertical axis shows the mean PFUs ± SD at each time point (N = 3).
Fig 4Total protein yields of reassortant viruses.
Average total protein yields (TPYs) of the reassortants. The vertical axis shows the average yields ± SD for three independent experiments. The differences in the yields between the reassortants were statistically analyzed using Welch’s t-test. (*p<0.05)
Fig 5Western blotting analysis of the purified viral proteins.
Purified viral concentrates of NIIDRG-10C, -10.1C, -10 and -10.1 were analyzed by SDS-PAGE. HA proteins were detected using a rabbit polyclonal antibody against recombinant HA protein of H7N9 (A/Shanghai/1/2013) (Sino Biological Inc. Beijing, China) and a donkey anti-rabbit IgG horseradish peroxidase-conjugated secondary antibody by western blotting analysis. Purified viral proteins were treated (A) or untreated (B) with N-glycosidase F.
Antigenic characterization of NIIDRG-10.1C and NIIDRG-10C by HAI test.
| Virus | HAI titers of each ferret antiserum raised against the virus | |||
|---|---|---|---|---|
| A/Anhui/1/2013 (H7N9) | A/Shanghai/1/2013 (H7N9) | A/mallard/ Netherlands/12/2000 (H7N3) | NIIDRG-10.1 | |
| A/Anhui/1/2013 (H7N9) | 160 | 160 | 80 | |
| A/Shanghai/1/2013(H7N9) | 20 | 160 | 20 | |
| A/mallard/Netherlands/12/2000 (H7N3) | 20 | 80 | 20 | |
| NIIDRG-10.1 | 40 | 80 | 80 | |
| NIIDRG-10.1C | 40 | 80 | 80 | 80 |
| NIIDRG-10C | 160 | 320 | 320 | 160 |
| NIIDRG-10C- N239D | 160 | 320 | 320 | 160 |
a Each virus was propagated in embryonated chicken eggs.
b Bold indicates HAI titer for the homologous strain.