Literature DB >> 27440183

Cloud-Based NoSQL Open Database of Pulmonary Nodules for Computer-Aided Lung Cancer Diagnosis and Reproducible Research.

José Raniery Ferreira Junior1, Marcelo Costa Oliveira2, Paulo Mazzoncini de Azevedo-Marques3.   

Abstract

Lung cancer is the leading cause of cancer-related deaths in the world, and its main manifestation is pulmonary nodules. Detection and classification of pulmonary nodules are challenging tasks that must be done by qualified specialists, but image interpretation errors make those tasks difficult. In order to aid radiologists on those hard tasks, it is important to integrate the computer-based tools with the lesion detection, pathology diagnosis, and image interpretation processes. However, computer-aided diagnosis research faces the problem of not having enough shared medical reference data for the development, testing, and evaluation of computational methods for diagnosis. In order to minimize this problem, this paper presents a public nonrelational document-oriented cloud-based database of pulmonary nodules characterized by 3D texture attributes, identified by experienced radiologists and classified in nine different subjective characteristics by the same specialists. Our goal with the development of this database is to improve computer-aided lung cancer diagnosis and pulmonary nodule detection and classification research through the deployment of this database in a cloud Database as a Service framework. Pulmonary nodule data was provided by the Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI), image descriptors were acquired by a volumetric texture analysis, and database schema was developed using a document-oriented Not only Structured Query Language (NoSQL) approach. The proposed database is now with 379 exams, 838 nodules, and 8237 images, 4029 of them are CT scans and 4208 manually segmented nodules, and it is allocated in a MongoDB instance on a cloud infrastructure.

Entities:  

Keywords:  3D texture analysis; Cloud computing; Computer-aided detection; Computer-aided diagnosis; Database as a Service; Document-oriented nonrelational database; Image Database Resource Initiative; Lung Image Database Consortium; Lung cancer; MongoDB; NoSQL; Pulmonary nodule; Reproducible research

Mesh:

Year:  2016        PMID: 27440183      PMCID: PMC5114234          DOI: 10.1007/s10278-016-9894-9

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  22 in total

1.  Towards a repository for standardized medical image and signal case data annotated with ground truth.

Authors:  Thomas M Deserno; Petra Welter; Alexander Horsch
Journal:  J Digit Imaging       Date:  2012-04       Impact factor: 4.056

Review 2.  Content-based image retrieval in radiology: current status and future directions.

Authors:  Ceyhun Burak Akgül; Daniel L Rubin; Sandy Napel; Christopher F Beaulieu; Hayit Greenspan; Burak Acar
Journal:  J Digit Imaging       Date:  2011-04       Impact factor: 4.056

3.  A Combination of Shape and Texture Features for Classification of Pulmonary Nodules in Lung CT Images.

Authors:  Ashis Kumar Dhara; Sudipta Mukhopadhyay; Anirvan Dutta; Mandeep Garg; Niranjan Khandelwal
Journal:  J Digit Imaging       Date:  2016-08       Impact factor: 4.056

4.  The Lung Image Database Consortium (LIDC): ensuring the integrity of expert-defined "truth".

Authors:  Samuel G Armato; Rachael Y Roberts; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Geoffrey McLennan; Roger M Engelmann; Peyton H Bland; Denise R Aberle; Ella A Kazerooni; Heber MacMahon; Edwin J R van Beek; David Yankelevitz; Barbara Y Croft; Laurence P Clarke
Journal:  Acad Radiol       Date:  2007-12       Impact factor: 3.173

5.  Automated pulmonary nodule detection based on three-dimensional shape-based feature descriptor.

Authors:  Wook-Jin Choi; Tae-Sun Choi
Journal:  Comput Methods Programs Biomed       Date:  2013-09-07       Impact factor: 5.428

6.  Combination of radiological and gray level co-occurrence matrix textural features used to distinguish solitary pulmonary nodules by computed tomography.

Authors:  Haifeng Wu; Tao Sun; Jingjing Wang; Xia Li; Wei Wang; Da Huo; Pingxin Lv; Wen He; Keyang Wang; Xiuhua Guo
Journal:  J Digit Imaging       Date:  2013-08       Impact factor: 4.056

7.  Texture feature analysis for computer-aided diagnosis on pulmonary nodules.

Authors:  Fangfang Han; Huafeng Wang; Guopeng Zhang; Hao Han; Bowen Song; Lihong Li; William Moore; Hongbing Lu; Hong Zhao; Zhengrong Liang
Journal:  J Digit Imaging       Date:  2015-02       Impact factor: 4.056

8.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

Review 9.  Computer-aided detection/diagnosis of breast cancer in mammography and ultrasound: a review.

Authors:  Afsaneh Jalalian; Syamsiah B T Mashohor; Hajjah Rozi Mahmud; M Iqbal B Saripan; Abdul Rahman B Ramli; Babak Karasfi
Journal:  Clin Imaging       Date:  2012-11-13       Impact factor: 1.605

10.  BRISC-an open source pulmonary nodule image retrieval framework.

Authors:  Michael O Lam; Tim Disney; Daniela S Raicu; Jacob Furst; David S Channin
Journal:  J Digit Imaging       Date:  2007-08-14       Impact factor: 4.056

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  4 in total

Review 1.  Characterization of Pulmonary Nodules Based on Features of Margin Sharpness and Texture.

Authors:  José Raniery Ferreira; Marcelo Costa Oliveira; Paulo Mazzoncini de Azevedo-Marques
Journal:  J Digit Imaging       Date:  2018-08       Impact factor: 4.056

2.  Selecting relevant 3D image features of margin sharpness and texture for lung nodule retrieval.

Authors:  José Raniery Ferreira; Paulo Mazzoncini de Azevedo-Marques; Marcelo Costa Oliveira
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-08-23       Impact factor: 2.924

3.  The Effects of Perinodular Features on Solid Lung Nodule Classification.

Authors:  José Lucas Leite Calheiros; Lucas Benevides Viana de Amorim; Lucas Lins de Lima; Ailton Felix de Lima Filho; José Raniery Ferreira Júnior; Marcelo Costa de Oliveira
Journal:  J Digit Imaging       Date:  2021-03-31       Impact factor: 4.903

4.  DICOM re-encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules.

Authors:  Andrey Fedorov; Matthew Hancock; David Clunie; Mathias Brochhausen; Jonathan Bona; Justin Kirby; John Freymann; Steve Pieper; Hugo J W L Aerts; Ron Kikinis; Fred Prior
Journal:  Med Phys       Date:  2020-09-06       Impact factor: 4.071

  4 in total

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