| Literature DB >> 27440044 |
Henry C Liu1, Neema Jamshidi1, Yuchen Chen2, Satish A Eraly3, Sai Yee Cho4, Vibha Bhatnagar5, Wei Wu3, Kevin T Bush6, Ruben Abagyan7, Bernhard O Palsson1, Sanjay K Nigam8.
Abstract
There has been a recent interest in the broader physiological importance of multispecific "drug" transporters of the SLC and ABC transporter families. Here, a novel multi-tiered systems biology approach was used to predict metabolites and signaling molecules potentially affected by the in vivo deletion of organic anion transporter 1 (Oat1, Slc22a6, originally NKT), a major kidney-expressed drug transporter. Validation of some predictions in wet-lab assays, together with re-evaluation of existing transport and knock-out metabolomics data, generated an experimentally validated, confidence ranked set of OAT1-interacting endogenous compounds enabling construction of an "OAT1-centered metabolic interaction network." Pathway and enrichment analysis indicated an important role for OAT1 in metabolism involving: the TCA cycle, tryptophan and other amino acids, fatty acids, prostaglandins, cyclic nucleotides, odorants, polyamines, and vitamins. The partly validated reconstructed network is also consistent with a major role for OAT1 in modulating metabolic and signaling pathways involving uric acid, gut microbiome products, and so-called uremic toxins accumulating in chronic kidney disease. Together, the findings are compatible with the hypothesized role of drug transporters in remote inter-organ and inter-organismal communication: The Remote Sensing and Signaling Hypothesis (Nigam, S. K. (2015) Nat. Rev. Drug Disc. 14, 29). The fact that OAT1 can affect many systemic biological pathways suggests that drug-metabolite interactions need to be considered beyond simple competition for the drug transporter itself and may explain aspects of drug-induced metabolic syndrome. Our approach should provide novel mechanistic insights into the role of OAT1 and other drug transporters implicated in metabolic diseases like gout, diabetes, and chronic kidney disease.Entities:
Keywords: ABC transporter; Recon; SLC transporter; chronic kidney disease; diabetes; genome-scale metabolic reconstruction; kidney; microbiome; pharmacophore; systems biology
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Year: 2016 PMID: 27440044 PMCID: PMC5016685 DOI: 10.1074/jbc.M116.745216
Source DB: PubMed Journal: J Biol Chem ISSN: 0021-9258 Impact factor: 5.157