| Literature DB >> 27439507 |
Trevor Sughrue1,2, Michael A Swiernik1, Yang Huang1, James P Brody3,4.
Abstract
BACKGROUND: The widespread adoption of electronic health records provides new opportunities to better predict which patients are likely to suffer a stroke. Using electronic health records, we assessed the correlation of different laboratory tests to future occurrences of a stroke.Entities:
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Year: 2016 PMID: 27439507 PMCID: PMC4955202 DOI: 10.1186/s12883-016-0619-y
Source DB: PubMed Journal: BMC Neurol ISSN: 1471-2377 Impact factor: 2.474
Fig. 1The age distribution of patients in the dataset
List of laboratory tests that were statistically significant correlates of a later diagnosis of stroke
| LOINC_ID | Adjusted coefficient |
| Name |
|---|---|---|---|
| 2160-0 | 0.214 | <1.0E-17 | Creatinine [Mass/volume] in Serum or Plasma |
| 2823-3 | 0.0725 | <1.0E-17 | Potassium [Moles/volume] in Serum or Plasma |
| 4548-4 | 0.0163 | <1.0E-17 | Hemoglobin A1c/Hemoglobin.total in Blood |
| 751-8 | 0.0129 | <1.0E-17 | Neutrophils [#/volume] in Blood by Automated count |
| 3094-0 | 0.000801 | <1.0E-17 | Urea nitrogen [Mass/volume] in Serum or Plasma |
| 770-8 | 0.000229 | <1.0E-17 | Neutrophils/100 leukocytes in Blood by Automated count |
| 17865-7 | 0.0000519 | <1.0E-17 | Glucose [Mass/volume] in Serum or Plasma --8 h fasting |
| 2345-7 | 0.0000315 | <1.0E-17 | Glucose [Mass/volume] in Serum or Plasma |
| 27353-2 | 0.0000237 | <1.0E-17 | Glucose mean value [Mass/volume] in Blood Estimated from glycated hemoglobin |
| 14957-5 | 0.00000201 | <1.0E-17 | Microalbumin [Mass/volume] in Urine |
| 14959-1 | 0.00000132 | <1.0E-17 | Microalbumin/Creatinine [Mass Ratio] in Urine |
| 33914-3 | 3.72E-15 | <1.0E-17 | Glomerular filtration rate/1.73 sq M.predicted by Creatinine-based formula (MDRD) |
| 14135-8 | 0.000000994 | 2.22E-16 | CD3 + CD8+ (T8 suppressor cells) cells [#/volume] in Blood |
| 5902-2 | 0.00253 | 2.22E-16 | Prothrombin time (PT) in Platelet poor plasma by Coagulation assay |
| 42246-9 | 0.213 | 4.44E-16 | Hemoglobin F/Hemoglobin.total in Blood by HPLC |
| 742-7 | 0.359 | 8.44E-15 | Monocytes [#/volume] in Blood by Automated count |
| 711-2 | 2.99 | 8.44E-15 | Eosinophils [#/volume] in Blood by Automated count |
| 8636-3 | 0.0000123 | 6.89E-14 | Q-T interval corrected |
| 8633-0 | 0.0000704 | 1.17E-12 | QRS duration |
| 30934-4 | 0.00000147 | 3.10E-12 | Natriuretic peptide B [Mass/volume] in Serum or Plasma |
| 713-8 | 0.0163 | 7.54E-12 | Eosinophils/100 leukocytes in Blood by Automated count |
| 6768-6 | 0.0000145 | 1.38E-08 | Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma |
| 8122-4 | 0.000000224 | 3.30E-08 | CD3 cells [#/volume] in Blood |
| 18518-1 | 0.0000775 | 5.97E-07 | T wave axis.frontal plane Reference beat |
| 2039-6 | 0.000871 | 0.00000895 | Carcinoembryonic Ag [Mass/volume] in Serum or Plasma |
| 1751-7 | −0.105 | <1.0E-17 | Albumin [Mass/volume] in Serum or Plasma |
| 2028-9 | −0.00139 | <1.0E-17 | Carbon dioxide |
| 4544-3 | −0.00102 | <1.0E-17 | Hematocrit [Volume Fraction] of Blood by Automated count |
| 736-9 | −0.000697 | <1.0E-17 | Lymphocytes/100 leukocytes in Blood by Automated count |
| 2085-9 | −0.000303 | <1.0E-17 | Cholesterol in HDL [Mass/volume] in Serum or Plasma |
| 2951-2 | −0.000219 | <1.0E-17 | Sodium [Moles/volume] in Serum or Plasma |
| 13457-7 | −0.0000849 | <1.0E-17 | Cholesterol in LDL [Mass/volume] in Serum or Plasma by calculation |
| 2089-1 | −0.0000721 | <1.0E-17 | Cholesterol in LDL [Mass/volume] in Serum or Plasma |
| 43396-1 | −0.0000624 | <1.0E-17 | Cholesterol non HDL [Mass/volume] in Serum or Plasma |
| 2093-3 | −0.0000403 | <1.0E-17 | Cholesterol [Mass/volume] in Serum or Plasma |
| 2500-7 | −0.0000104 | <1.0E-17 | Iron binding capacity [Mass/volume] in Serum or Plasma |
| 2498-4 | −0.0000533 | 1.99E-10 | Iron [Mass/volume] in Serum or Plasma |
| 2075-0 | −0.000161 | 4.53E-08 | Chloride [Moles/volume] in Serum or Plasma |
LOINC_ID is a standardized identifier for the laboratory. The adjusted coefficient indicates the change in the likelihood of stroke given a 1 % increase in lab values. The p-value indicates the likelihood that the given correlation is due solely to chance. A negative adjusted coefficient indicates that higher test values lower the risk of stroke
Relative risk
| LOINC_ID | Relative_Risk | 95 % confidence interval low | 95 % confidence interval high |
|---|---|---|---|
| Urea nitrogen [Mass/volume] in Serum or Plasma | 5.61 | 5.05 | 6.23 |
| Creatinine [Mass/volume] in Serum or Plasma | 4.48 | 4.17 | 4.82 |
| Natriuretic peptide B [Mass/volume] in Serum or Plasma | 4.18 | 3.25 | 5.37 |
| Prothrombin time (PT) in Platelet poor plasma by Coagulation assay | 3.59 | 2.75 | 4.69 |
| Microalbumin/Creatinine [Mass Ratio] in Urine | 3.3 | 2.97 | 3.68 |
| Glucose [Mass/volume] in Serum or Plasma | 3.21 | 2.84 | 3.63 |
| Glucose [Mass/volume] in Serum or Plasma --8 h fasting | 2.89 | 2.61 | 3.19 |
| Hemoglobin A1c/Hemoglobin.total in Blood | 2.62 | 2.41 | 2.84 |
| CD3 + CD8+ (T8 suppressor cells) cells [#/volume] in Blood | 2.6 | 1.3 | 5.2 |
| Microalbumin [Mass/volume] in Urine | 2.5 | 2.27 | 2.75 |
| Q-T interval corrected | 2.28 | 2.03 | 2.55 |
| Neutrophils/100 leukocytes in Blood by Automated count | 2.17 | 2.01 | 2.35 |
| Monocytes [#/volume] in Blood by Automated count | 2.06 | 1.81 | 2.35 |
| Neutrophils [#/volume] in Blood by Automated count | 1.98 | 1.8 | 2.17 |
| Glucose mean value [Mass/volume] in Blood Estimated from glycated hemoglobin | 1.94 | 1.8 | 2.09 |
| Eosinophils/100 leukocytes in Blood by Automated count | 1.85 | 1.71 | 2.01 |
| Carcinoembryonic Ag [Mass/volume] in Serum or Plasma | 1.84 | 1.22 | 2.8 |
| QRS duration | 1.81 | 1.62 | 2.02 |
| CD3 cells [#/volume] in Blood | 1.75 | 0.87 | 3.49 |
| Potassium [Moles/volume] in Serum or Plasma | 1.64 | 1.56 | 1.73 |
| T wave axis.frontal plane Reference beat | 1.62 | 1.47 | 1.78 |
| Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma | 1.47 | 1.33 | 1.62 |
| Hemoglobin F/Hemoglobin.total in Blood by HPLC | 1.4 | 0.52 | 3.72 |
| Iron binding capacity [Mass/volume] in Serum or Plasma | 0.21 | 0.19 | 0.22 |
| Cholesterol in LDL [Mass/volume] in Serum or Plasma by calculation | 0.27 | 0.26 | 0.28 |
| Cholesterol non HDL [Mass/volume] in Serum or Plasma | 0.28 | 0.26 | 0.29 |
| Cholesterol in LDL [Mass/volume] in Serum or Plasma | 0.31 | 0.29 | 0.33 |
| Cholesterol [Mass/volume] in Serum or Plasma | 0.32 | 0.31 | 0.33 |
| Albumin [Mass/volume] in Serum or Plasma | 0.33 | 0.31 | 0.36 |
| Lymphocytes/100 leukocytes in Blood by Automated count | 0.38 | 0.34 | 0.44 |
| Hematocrit [Volume Fraction] of Blood by Automated count | 0.46 | 0.44 | 0.47 |
| Iron [Mass/volume] in Serum or Plasma | 0.56 | 0.51 | 0.62 |
| Cholesterol in HDL [Mass/volume] in Serum or Plasma | 0.65 | 0.63 | 0.68 |
| Sodium [Moles/volume] in Serum or Plasma | 0.72 | 0.69 | 0.75 |
| Chloride [Moles/volume] in Serum or Plasma | 0.72 | 0.69 | 0.75 |
| Carbon dioxide | 0.78 | 0.75 | 0.82 |
| Glomerular filtration rate/1.73 sq M.predicted by Creatinine-based formula (MDRD) | a | ||
| Eosinophils [#/volume] in Blood by Automated count | a |
a indicates the value is incalculable due to lack of stroke events in 1st or 4th quartile
The relationship between population percentile levels and absolute measurements of the 38 different laboratory tests
| LOINC_ID | 0.05 | 0.25 | 0.5 | 0.75 | 0.95 | Units |
|---|---|---|---|---|---|---|
| Creatinine [Mass/volume] in Serum or Plasma | 0.58 | 0.7 | 0.89 | 1.04 | 1.55 | mg/dL |
| Albumin [Mass/volume] in Serum or Plasma | 3 | 3.65 | 4 | 4.21 | 4.7 | g/dL |
| Potassium [Moles/volume] in Serum or Plasma | 3.5 | 3.8 | 4.1 | 4.3 | 4.8 | mmol/L |
| Hemoglobin A1c/Hemoglobin.total in Blood | 5.3 | 5.7 | 6.2 | 7.2 | 9.8 | % |
| Neutrophils [#/volume] in Blood by Automated count | 1.9 | 3 | 4.1 | 5.45 | 8.7 | 10^3/uL |
| Carbon dioxide | 23 | 25 | 27 | 28 | 31 | mmol/L |
| Hematocrit [Volume Fraction] of Blood by Automated count | 32.4 | 37.2 | 40.2 | 43.1 | 47.25 | % |
| Urea nitrogen [Mass/volume] in Serum or Plasma | 8 | 11 | 15 | 20 | 39.5 | mg/dL |
| Lymphocytes/100 leukocytes in Blood by Automated count | 12.1 | 21.6 | 28.3 | 35 | 46.3 | % |
| Cholesterol in HDL [Mass/volume] in Serum or Plasma | 32 | 41 | 49 | 58 | 77 | mg/dL |
| Neutrophils/100 leukocytes in Blood by Automated count | 41.1 | 53.2 | 60.6 | 67.8 | 79 | % |
| Sodium [Moles/volume] in Serum or Plasma | 134 | 137 | 139 | 140 | 143 | mmol/L |
| Cholesterol in LDL [Mass/volume] in Serum or Plasma by calculation | 56 | 82 | 104 | 129 | 170 | mg/dL |
| Cholesterol in LDL [Mass/volume] in Serum or Plasma | 57 | 82 | 104 | 129 | 171 | mg/dL |
| Cholesterol non HDL [Mass/volume] in Serum or Plasma | 78 | 106 | 131 | 160 | 209 | mg/dL |
| Glucose [Mass/volume] in Serum or Plasma --8 h fasting | 77 | 87 | 95 | 104 | 143 | mg/dL |
| Cholesterol [Mass/volume] in Serum or Plasma | 123 | 155 | 181 | 210 | 258 | mg/dL |
| Glucose [Mass/volume] in Serum or Plasma | 73 | 85 | 94 | 107 | 179 | mg/dL |
| Glucose mean value [Mass/volume] in Blood Estimated from glycated hemoglobin | 107 | 120 | 138 | 167 | 232 | mg/dL |
| Iron binding capacity [Mass/volume] in Serum or Plasma | 246 | 311 | 354 | 400 | 471 | ug/dL |
| Microalbumin [Mass/volume] in Urine | 3.6 | 7.1 | 17.8 | 61.1 | 747.6 | mg/dL |
| Microalbumin/Creatinine [Mass Ratio] in Urine | 2.7 | 5.9 | 14.8 | 54.2 | 765.6 | |
| Glomerular filtration rate/1.73 sq M.predicted by Creatinine-based formula (MDRD) | 34 | 58 | 71 | 80 | 88 | mL/min/1.73 m2 |
| CD3 + CD8+ (T8 suppressor cells) cells [#/volume] in Blood | 343 | 597 | 829 | 1128 | 1768 | 10^9/L |
| Prothrombin time (PT) in Platelet poor plasma by Coagulation assay | 12.1 | 12.7 | 13.3 | 14.2 | 26 | seconds |
| Hemoglobin F/Hemoglobin.total in Blood by HPLC | 0.2 | 0.3 | 0.5 | 0.7 | 2 | % |
| Monocytes [#/volume] in Blood by Automated count | 0.3 | 0.4 | 0.5 | 0.6 | 1 | 10^3/uL |
| Eosinophils [#/volume] in Blood by Automated count | 0 | 0 | 0.1 | 0.2 | 0.5 | 10^3/uL |
| Q-T interval corrected | 387 | 410 | 427 | 444 | 476.5 | ms |
| QRS duration | 72 | 82 | 88 | 96 | 128 | ms |
| Natriuretic peptide B [Mass/volume] in Serum or Plasma | 13 | 34 | 129 | 337 | 1099 | pg/mL |
| Eosinophils/100 leukocytes in Blood by Automated count | 0.3 | 1.1 | 2 | 3.2 | 6.4 | % |
| Iron [Mass/volume] in Serum or Plasma | 23 | 52 | 77 | 105 | 158 | ug/dL |
| Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma | 40 | 54 | 67 | 84 | 145 | Units/L |
| CD3 cells [#/volume] in Blood | 744 | 1201 | 1541 | 1940 | 2755 | cells/uL |
| Chloride [Moles/volume] in Serum or Plasma | 98 | 102 | 104 | 105 | 108 | mmol/L |
| T wave axis.frontal plane Reference beat | −6 | 24 | 41 | 56 | 83 | degree(angle) |
| Carcinoembryonic Ag [Mass/volume] in Serum or Plasma | 1.1 | 1.6 | 2.5 | 4.8 | 59.7 | ng/mL |
Fig. 2This figure presents the relationship between serum cholesterol levels and the risk of stroke measured from the electronic medical records of 2.4 million patients over a two year time span. Error bars indicate 95 % confidence intervals. The LDL levels calculated with the Friedewald equation are known to be systematically lower than direct measurements of LDL cholesterol [49]
Fig. 3This figure presents Kaplan Meier survival graphs for 38 different laboratory tests. In each case, the graphs show the survival (percentage of the population who have not been diagnosed with a stroke) as a function of time. The population is broken up into five categories corresponding to those in the 5%, 25%, 50%, 75%, and 95%. The test values that correspond to those percentiles are given in Table 3. The 38 different survival graphs are separated into three panels: Fig 3, Fig 4, and Fig 5
Fig. 4This figure presents Kaplan Meier survival graphs for 38 different laboratory tests. In each case, the graphs show the survival (percentage of the population who have not been diagnosed with a stroke) as a function of time. The population is broken up into five categories corresponding to those in the 5%, 25%, 50%, 75%, and 95%. The test values that correspond to those percentiles are given in Table 3. The 38 different survival graphs are separated into three panels: Fig 3, Fig 4, and Fig 5
Fig. 5This figure presents Kaplan Meier survival graphs for 38 different laboratory tests. In each case, the graphs show the survival (percentage of the population who have not been diagnosed with a stroke) as a function of time. The population is broken up into five categories corresponding to those in the 5%, 25%, 50%, 75%, and 95%. The test values that correspond to those percentiles are given in Table 3. The 38 different survival graphs are separated into three panels: Fig 3, Fig 4, and Fig 5