Literature DB >> 27436961

Mass spectrometry-guided refinement of chemical energy buffers.

T-R Chen1, P L Urban2.   

Abstract

Biocatalytic reactions often require supplying chemical energy and phosphate groups in the form of adenosine triphosphate (ATP). Auxiliary enzymes can be used to convert a reaction by-product-adenosine diphosphate (ADP)-back to ATP. By employing real-time mass spectrometry (RTMS), one can gain an insight into inter-conversions of reactants in multi-enzyme reaction systems and optimize the reaction conditions. In this study, temporal traces of ions corresponding to adenosine monophosphate (AMP), ADP and ATP provided vital information that could be used to adjust activities of the 'buffering enzymes'. Using the RTMS results as a feedback, we also characterized a bienzymatic energy buffer that enables the recovery of ATP in the cases where it is directly hydrolysed to AMP in the main enzymatic reaction. The significance of careful selection of enzyme activities-guided by RTMS-is exemplified in the synthesis of glucose-6-phosphate by hexokinase in the presence of a buffering enzyme, pyruvate kinase. Relative activities of the two enzymes, present in the reaction mixture, influence biosynthetic reaction yields. This observation supports the conclusion that optimization of chemical energy recycling procedures is critical for the biosynthetic reaction economy.

Entities:  

Keywords:  adenosine triphosphate; biocatalysis; biosynthesis; enzyme; mass spectrometry; nucleotide recycling

Year:  2016        PMID: 27436961      PMCID: PMC4950186          DOI: 10.1098/rspa.2015.0812

Source DB:  PubMed          Journal:  Proc Math Phys Eng Sci        ISSN: 1364-5021            Impact factor:   2.704


  24 in total

1.  Prolonging cell-free protein synthesis by selective reagent additions.

Authors:  D M Kim; J R Swartz
Journal:  Biotechnol Prog       Date:  2000 May-Jun

2.  Multiplex inhibitor screening and kinetic constant determinations for yeast hexokinase using mass spectrometry based assays.

Authors:  Hong Gao; Julie A Leary
Journal:  J Am Soc Mass Spectrom       Date:  2003-03       Impact factor: 3.109

3.  Experimental evidence for growth advantage and metabolic shift stimulated by photophosphorylation of proteorhodopsin expressed in Escherichia coli at anaerobic condition.

Authors:  Ying Wang; Yan Li; Tuan Xu; Zhenyu Shi; Qiong Wu
Journal:  Biotechnol Bioeng       Date:  2015-01-20       Impact factor: 4.530

4.  Optimization of a blueprint for in vitro glycolysis by metabolic real-time analysis.

Authors:  Matthias Bujara; Michael Schümperli; René Pellaux; Matthias Heinemann; Sven Panke
Journal:  Nat Chem Biol       Date:  2011-03-20       Impact factor: 15.040

5.  In vitro ATP regeneration from polyphosphate and AMP by polyphosphate:AMP phosphotransferase and adenylate kinase from Acinetobacter johnsonii 210A.

Authors:  S M Resnick; A J Zehnder
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

6.  A bioluminescence method for direct measurement of phosphodiesterase activity.

Authors:  Antoine Younès; Yevgeniya O Lukyanenko; Alexey E Lyashkov; Edward G Lakatta; Steven J Sollott
Journal:  Anal Biochem       Date:  2011-05-30       Impact factor: 3.365

7.  Advances in ultrasensitive mass spectrometry of organic molecules.

Authors:  Mathivathani Kandiah; Pawel L Urban
Journal:  Chem Soc Rev       Date:  2013-06-21       Impact factor: 54.564

8.  Production of glucose-6-phosphate by glucokinase coupled with an ATP regeneration system.

Authors:  Bingkun Yan; Qingbao Ding; Ling Ou; Zhi Zou
Journal:  World J Microbiol Biotechnol       Date:  2013-10-29       Impact factor: 3.312

9.  Microcontroller-assisted compensation of adenosine triphosphate levels: instrument and method development.

Authors:  Jie-Bi Hu; Ting-Ru Chen; Yu-Chie Chen; Pawel L Urban
Journal:  Sci Rep       Date:  2015-01-30       Impact factor: 4.379

Review 10.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

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  1 in total

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Authors:  Kuppusamy Kanagaraj; Chao Xiao; Ming Rao; Chunying Fan; Victor Borovkov; Guo Cheng; Dayang Zhou; Zhihui Zhong; Dan Su; Xingke Yu; Jiabin Yao; Taotao Hao; Wanhua Wu; Jason J Chruma; Cheng Yang
Journal:  iScience       Date:  2020-02-21
  1 in total

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