Literature DB >> 27434812

Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data.

S Barnes, H P Benton, K Casazza, S J Cooper, X Cui, X Du, J A Engler, J H Kabarowski, S Li, W Pathmasiri, J K Prasain, M B Renfrow, H K Tiwari.   

Abstract

Metabolomics is perhaps the most challenging of the -omics fields, given the complexity of an organism's metabolome and the rapid rate at which it changes. When one sets out to study metabolism there are numerous dynamic variables that can influence metabolism that must be considered. Recognizing the experimental challenges confronting researchers who undertake metabolism studies, workshops like the one at University of Alabama at Birmingham have been established to offer instructional guidance. A summary of the UAB course training materials is being published as a two-part Special Feature Tutorial. In this month's Part I the authors discuss details of good experimental design and sample collection and handling. In an upcoming Part II, the authors discuss in detail the various aspects of data analysis.
Copyright © 2016 John Wiley & Sons, Ltd.

Entities:  

Year:  2016        PMID: 27434812     DOI: 10.1002/jms.3672

Source DB:  PubMed          Journal:  J Mass Spectrom        ISSN: 1076-5174            Impact factor:   1.982


  8 in total

1.  Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future.

Authors:  Stephen Barnes; H Paul Benton; Krista Casazza; Sara J Cooper; Xiangqin Cui; Xiuxia Du; Jeffrey Engler; Janusz H Kabarowski; Shuzhao Li; Wimal Pathmasiri; Jeevan K Prasain; Matthew B Renfrow; Hemant K Tiwari
Journal:  J Mass Spectrom       Date:  2016-08       Impact factor: 1.982

Review 2.  Non-targeted metabolomics and associations with per- and polyfluoroalkyl substances (PFAS) exposure in humans: A scoping review.

Authors:  Pengfei Guo; Tristan Furnary; Vasilis Vasiliou; Qi Yan; Kate Nyhan; Dean P Jones; Caroline H Johnson; Zeyan Liew
Journal:  Environ Int       Date:  2022-02-26       Impact factor: 9.621

3.  Toxicometabolomics of the new psychoactive substances α-PBP and α-PEP studied in HepaRG cell incubates by means of untargeted metabolomics revealed unexpected amino acid adducts.

Authors:  Sascha K Manier; Lea Wagmann; Veit Flockerzi; Markus R Meyer
Journal:  Arch Toxicol       Date:  2020-04-20       Impact factor: 5.153

4.  Untargeted metabolomics by high resolution mass spectrometry coupled to normal and reversed phase liquid chromatography as a tool to study the in vitro biotransformation of new psychoactive substances.

Authors:  Sascha K Manier; Andreas Keller; Jan Schäper; Markus R Meyer
Journal:  Sci Rep       Date:  2019-02-26       Impact factor: 4.379

5.  Impact of the used solvent on the reconstitution efficiency of evaporated biosamples for untargeted metabolomics studies.

Authors:  Sascha K Manier; Markus R Meyer
Journal:  Metabolomics       Date:  2020-03-02       Impact factor: 4.290

Review 6.  A Hypothesis From Metabolomics Analysis of Diabetic Retinopathy: Arginine-Creatine Metabolic Pathway May Be a New Treatment Strategy for Diabetic Retinopathy.

Authors:  Ye Sun; Ling Kong; Ai-Hua Zhang; Ying Han; Hui Sun; Guang-Li Yan; Xi-Jun Wang
Journal:  Front Endocrinol (Lausanne)       Date:  2022-03-24       Impact factor: 5.555

7.  Integrated targeted serum metabolomic profile and its association with gender, age, disease severity, and pattern identification in acne.

Authors:  Min Hee Kim; In Jin Ha; Eunok Kim; Kyuseok Kim
Journal:  PLoS One       Date:  2020-01-17       Impact factor: 3.240

8.  Metabolomic profiling of stool of two-year old children from the INSIGHT study reveals links between butyrate and child weight outcomes.

Authors:  Debmalya Nandy; Sarah J C Craig; Jingwei Cai; Yuan Tian; Ian M Paul; Jennifer S Savage; Michele E Marini; Emily E Hohman; Matthew L Reimherr; Andrew D Patterson; Kateryna D Makova; Francesca Chiaromonte
Journal:  Pediatr Obes       Date:  2021-07-30       Impact factor: 3.910

  8 in total

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