Literature DB >> 27434017

Analysis of a minimal Rho-GTPase circuit regulating cell shape.

William R Holmes1, Leah Edelstein-Keshet2.   

Abstract

Networks of Rho-family GTPases regulate eukaryotic cell polarization and motility by controlling assembly and contraction of the cytoskeleton. The mutually inhibitory Rac-Rho circuit is emerging as a central, regulatory hub that can affect the shape and motility phenotype of eukaryotic cells. Recent experimental manipulation of the amounts of Rac and Rho or their regulators (guanine nucleotide-exchange factors, GTPase-activating proteins, guanine nucleotide dissociation inhibitors) have been shown to bias the prevalence of these different states and promote transitions between them. Here we show that part of this data can be understood in terms of inherent Rac-Rho mutually inhibitory dynamics. We analyze a spatio-temporal mathematical model of Rac-Rho dynamics to produce a detailed set of predictions of how parameters such as GTPase rates of activation and total amounts affect cell decisions (such as Rho-dominated contraction, Rac-dominated spreading, and spatially segregated Rac-Rho polarization). We find that in some parameter regimes, a cell can take on any of these three fates depending on its environment or stimuli. We also predict how experimental manipulations (corresponding to parameter variations) can affect cell shapes observed. Our methods are based on local perturbation analysis (a kind of nonlinear stability analysis), and an approximation of nonlinear feedback by sharp switches. We compare the Rac-Rho model to an even simpler single-GTPase ('wave-pinning') model and demonstrate that the overall behavior is inherent to GTPase properties, rather than stemming solely from network topology.

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Year:  2016        PMID: 27434017     DOI: 10.1088/1478-3975/13/4/046001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  25 in total

1.  Rac activation is key to cell motility and directionality: An experimental and modelling investigation.

Authors:  Jessica K Lyda; Zhang L Tan; Abira Rajah; Asheesh Momi; Laurent Mackay; Claire M Brown; Anmar Khadra
Journal:  Comput Struct Biotechnol J       Date:  2019-11-07       Impact factor: 7.271

2.  Spatiotemporal dynamics of a reaction-diffusion model of pollen tube tip growth.

Authors:  Chenwei Tian; Qingyan Shi; Xinping Cui; Jingzhe Guo; Zhenbiao Yang; Junping Shi
Journal:  J Math Biol       Date:  2019-07-06       Impact factor: 2.259

3.  A free boundary mechanobiological model of epithelial tissues.

Authors:  Tamara A Tambyah; Ryan J Murphy; Pascal R Buenzli; Matthew J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2020-11-18       Impact factor: 2.704

Review 4.  Rac1 and RhoA: Networks, loops and bistability.

Authors:  Lan K Nguyen; Boris N Kholodenko; Alex von Kriegsheim
Journal:  Small GTPases       Date:  2016-09-10

5.  Bayesian integrative analysis of epigenomic and transcriptomic data identifies Alzheimer's disease candidate genes and networks.

Authors:  Hans-Ulrich Klein; Martin Schäfer; David A Bennett; Holger Schwender; Philip L De Jager
Journal:  PLoS Comput Biol       Date:  2020-04-07       Impact factor: 4.475

6.  Periodic propagating waves coordinate RhoGTPase network dynamics at the leading and trailing edges during cell migration.

Authors:  Alfonso Bolado-Carrancio; Oleksii S Rukhlenko; Elena Nikonova; Mikhail A Tsyganov; Anne Wheeler; Amaya Garcia-Munoz; Walter Kolch; Alex von Kriegsheim; Boris N Kholodenko
Journal:  Elife       Date:  2020-07-24       Impact factor: 8.140

7.  Membrane Tension Can Enhance Adaptation to Maintain Polarity of Migrating Cells.

Authors:  Cole Zmurchok; Jared Collette; Vijay Rajagopal; William R Holmes
Journal:  Biophys J       Date:  2020-09-07       Impact factor: 4.033

Review 8.  A mathematical model of GTPase pattern formation during single-cell wound repair.

Authors:  William R Holmes; Adriana E Golding; William M Bement; Leah Edelstein-Keshet
Journal:  Interface Focus       Date:  2016-10-06       Impact factor: 3.906

9.  Mechanochemical Coupling and Junctional Forces during Collective Cell Migration.

Authors:  Justin Bui; Daniel E Conway; Rebecca L Heise; Seth H Weinberg
Journal:  Biophys J       Date:  2019-05-28       Impact factor: 4.033

10.  Simple Rho GTPase Dynamics Generate a Complex Regulatory Landscape Associated with Cell Shape.

Authors:  Cole Zmurchok; William R Holmes
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

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