Literature DB >> 27433922

Unusual Reversible Oligomerization of Unfolded Dengue Envelope Protein Domain 3 at High Temperatures and Its Abolition by a Point Mutation.

Tomonori Saotome1, Shigeyoshi Nakamura2,3, Mohammad M Islam1, Akiko Nakazawa2, Mariano Dellarole4, Fumio Arisaka5, Shun-Ichi Kidokoro2, Yutaka Kuroda1.   

Abstract

We report differential scanning calorimetry (DSC) experiments between 10 and 120 °C of Dengue 4 envelope protein domain 3 (DEN4 ED3), a small 107-residue monomeric globular protein domain. The thermal unfolding of DEN4 ED3 was fully reversible and exhibited two peculiar endothermic peaks. AUC (analytical ultracentrifugation) experiments at 25 °C indicated that DEN4 ED3 was monomeric. Detailed thermodynamic analysis indicated that the two endothermic peaks separated with an increasing protein concentration, and global fitting of the DSC curves strongly suggested the presence of unfolded tetramers at temperatures around 80-90 °C, which dissociated to unfolded monomers at even higher temperatures. To further characterize this rare thermal unfolding process, we designed and constructed a DEN4 ED3 variant that would unfold according to a two-state model, typical of globular proteins. We thus substituted Val 380, the most buried residue at the dimeric interface in the protein crystal, with less hydrophobic amino acids (Ala, Ser, Thr, Asn, and Lys). All variants showed a single heat absorption peak, typical of small globular proteins. In particular, the DSC thermogram of DEN4 V380K indicated a two-state reversible thermal unfolding independent of protein concentration, indicating that the high-temperature oligomeric state was successfully abolished by a single mutation. These observations confirmed the standard view that small monomeric globular proteins undergo a two-state unfolding. However, the reversible formation of unfolded oligomers at high temperatures is a truly new phenomenon, which was fully inhibited by an accurately designed single mutation.

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Year:  2016        PMID: 27433922     DOI: 10.1021/acs.biochem.6b00431

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  8 in total

1.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

2.  Reverse Engineering Analysis of the High-Temperature Reversible Oligomerization and Amyloidogenicity of PSD95-PDZ3.

Authors:  Sawaros Onchaiya; Tomonori Saotome; Kenji Mizutani; Jose C Martinez; Jeremy R H Tame; Shun-Ichi Kidokoro; Yutaka Kuroda
Journal:  Molecules       Date:  2022-04-28       Impact factor: 4.927

3.  Thermodynamic Analysis of Point Mutations Inhibiting High-Temperature Reversible Oligomerization of PDZ3.

Authors:  Tomonori Saotome; Taichi Mezaki; Subbaian Brindha; Satoru Unzai; Jose C Martinez; Shun-Ichi Kidokoro; Yutaka Kuroda
Journal:  Biophys J       Date:  2020-08-28       Impact factor: 4.033

4.  Crystal structures of highly simplified BPTIs provide insights into hydration-driven increase of unfolding enthalpy.

Authors:  Mohammad Monirul Islam; Masafumi Yohda; Shun-Ichi Kidokoro; Yutaka Kuroda
Journal:  Sci Rep       Date:  2017-03-07       Impact factor: 4.379

5.  The Dengue ED3 Dot Assay, a Novel Serological Test for the Detection of Denguevirus Type-Specific Antibodies and Its Application in a Retrospective Seroprevalence Study.

Authors:  Heidi Auerswald; Leonard Klepsch; Sebastian Schreiber; Janne Hülsemann; Kati Franzke; Simone Kann; Bunthin Y; Veasna Duong; Philippe Buchy; Michael Schreiber
Journal:  Viruses       Date:  2019-03-27       Impact factor: 5.048

6.  Anti-Dengue ED3 Long-Term Immune Response With T-Cell Memory Generated Using Solubility Controlling Peptide Tags.

Authors:  Mohammad M Islam; Shiho Miura; Mohammad N Hasan; Nafsoon Rahman; Yutaka Kuroda
Journal:  Front Immunol       Date:  2020-03-17       Impact factor: 7.561

7.  Direct Analysis of Mitochondrial Damage Caused by Misfolded/Destabilized Proteins.

Authors:  Jannatul Aklima; Sawaros Onchaiya; Tomonori Saotome; Punitha Velmurugan; Taihei Motoichi; Jannatul Naima; Yutaka Kuroda; Yoshihiro Ohta
Journal:  Int J Mol Sci       Date:  2022-08-31       Impact factor: 6.208

8.  Solubility Controlling Peptide Tags of Opposite Charges Generate a Bivalent Immune Response Against Dengue ED3 Serotypes 3 and 4.

Authors:  Nafsoon Rahman; Shiho Miura; Mami Okawa; Md Golam Kibria; Mohammad Monirul Islam; Yutaka Kuroda
Journal:  Front Immunol       Date:  2021-06-11       Impact factor: 7.561

  8 in total

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