Literature DB >> 27430161

Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits.

Yulia V Gerasimova1, Dmitry M Kolpashchikov2.   

Abstract

Modern electronic microprocessors use semiconductor logic gates organized on a silicon chip to enable efficient inter-gate communication. Here, arrays of communicating DNA logic gates integrated on a single DNA tile were designed and used to process nucleic acid inputs in a reusable format. Our results lay the foundation for the development of a DNA nanoprocessor, a small and biocompatible device capable of performing complex analyses of DNA and RNA inputs.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  DNA logic gates; NOR gates; crossover DNA tiles; molecular beacons; molecular computation

Mesh:

Substances:

Year:  2016        PMID: 27430161     DOI: 10.1002/anie.201603265

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  10 in total

1.  A spatially localized architecture for fast and modular DNA computing.

Authors:  Gourab Chatterjee; Neil Dalchau; Richard A Muscat; Andrew Phillips; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2017-07-24       Impact factor: 39.213

2.  A Microsphere-Supported Lipid Bilayer Platform for DNA Reactions on a Fluid Surface.

Authors:  Aurora Fabry-Wood; Madalyn E Fetrow; Carl W Brown; Nicholas A Baker; Nadiezda Fernandez Oropeza; Andrew P Shreve; Gabriel A Montaño; Darko Stefanovic; Matthew R Lakin; Steven W Graves
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-24       Impact factor: 9.229

3.  Signal-processing and adaptive prototissue formation in metabolic DNA protocells.

Authors:  Avik Samanta; Maximilian Hörner; Wei Liu; Wilfried Weber; Andreas Walther
Journal:  Nat Commun       Date:  2022-07-08       Impact factor: 17.694

4.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

5.  Multiple advanced logic gates made of DNA-Ag nanocluster and the application for intelligent detection of pathogenic bacterial genes.

Authors:  Xiaodong Lin; Yaqing Liu; Jiankang Deng; Yanlong Lyu; Pengcheng Qian; Yunfei Li; Shuo Wang
Journal:  Chem Sci       Date:  2018-01-08       Impact factor: 9.825

6.  A label-free and enzyme-free platform with a visible output for constructing versatile logic gates using caged G-quadruplex as the signal transducer.

Authors:  Junhua Chen; Jiafeng Pan; Shu Chen
Journal:  Chem Sci       Date:  2017-10-20       Impact factor: 9.825

7.  Entropy-driven DNA logic circuits regulated by DNAzyme.

Authors:  Jing Yang; Ranfeng Wu; Yifan Li; Zhiyu Wang; Linqiang Pan; Qiang Zhang; Zuhong Lu; Cheng Zhang
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

Review 8.  Aptamer-Functionalized Hybrid Nanostructures for Sensing, Drug Delivery, Catalysis and Mechanical Applications.

Authors:  Margarita Vázquez-González; Itamar Willner
Journal:  Int J Mol Sci       Date:  2021-02-11       Impact factor: 5.923

9.  Addressable configurations of DNA nanostructures for rewritable memory.

Authors:  Arun Richard Chandrasekaran; Oksana Levchenko; Dhruv S Patel; Molly MacIsaac; Ken Halvorsen
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

10.  A Janus-inspired amphichromatic system that kills two birds with one stone for operating a "DNA Janus Logic Pair" (DJLP) library.

Authors:  Daoqing Fan; Juan Wang; Erkang Wang; Shaojun Dong
Journal:  Chem Sci       Date:  2019-06-13       Impact factor: 9.825

  10 in total

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