Literature DB >> 27427966

Regulation of membrane traffic by Rab GEF and GAP cascades.

Peter Novick1.   

Abstract

ASBTRACT Rab GTPases serve as master regulators of membrane traffic, each typically controlling several different aspects of a specific stage of membrane traffic by recruiting diverse effector proteins such as cytoskeletal motors, vesicle tethering proteins and regulators of SNARE complex assembly. Rabs, in turn, are regulated by specific guanine nucleotide exchange factors (GEFs), which catalyze the displacement of GDP and binding of GTP, as well as GTPase activating proteins (GAPs) that stimulate the slow intrinsic rate of GTP hydrolysis. Here I review our studies on the final stages of the yeast secretory pathway that have led us to propose that adjacent Rabs on a pathway are networked to one another through their regulators; specifically we have shown that the Rab, Ypt32, in its GTP-bound form recruits both Sec2, the GEF that activates the downstream Rab, Sec4, as well as Gyp1, the GAP that inactivates the upstream Rab, Ypt1. The postulated effect of these counter-current cascades is a programmed series of abrupt Rab transitions that lead to critical changes in the functional identity of the membrane as it flows along the exocytic pathway. Phosphoinositides also play key roles in the temporal and spatial regulation of membrane traffic. The Golgi pool of phosphatidylinositol 4-phosphate (PI(4)P) works in concert with Ypt32 to initially recruit Sec2, yet a subsequent drop in PI(4)P levels directs a regulatory switch in Sec2 function in which it binds to the Sec4 effector Sec15 generating a positive feedback loop. PI(4)P distribution together with Sec2 phosphorylation by a casein kinase determines when and where each regulatory circuit is used.

Entities:  

Keywords:  GAP cascade; GEF cascade; GTPase activating protein; Rab; exchange factor; membrane traffic

Mesh:

Substances:

Year:  2016        PMID: 27427966      PMCID: PMC5129893          DOI: 10.1080/21541248.2016.1213781

Source DB:  PubMed          Journal:  Small GTPases        ISSN: 2154-1248


  21 in total

1.  A four-step cycle driven by PI(4)P hydrolysis directs sterol/PI(4)P exchange by the ER-Golgi tether OSBP.

Authors:  Bruno Mesmin; Joëlle Bigay; Joachim Moser von Filseck; Sandra Lacas-Gervais; Guillaume Drin; Bruno Antonny
Journal:  Cell       Date:  2013-11-07       Impact factor: 41.582

Review 2.  GTPase networks in membrane traffic.

Authors:  Emi Mizuno-Yamasaki; Felix Rivera-Molina; Peter Novick
Journal:  Annu Rev Biochem       Date:  2012-03-29       Impact factor: 23.643

3.  Myosin V transports secretory vesicles via a Rab GTPase cascade and interaction with the exocyst complex.

Authors:  Yui Jin; Azmiri Sultana; Pallavi Gandhi; Edward Franklin; Susan Hamamoto; Amir R Khan; Mary Munson; Randy Schekman; Lois S Weisman
Journal:  Dev Cell       Date:  2011-12-13       Impact factor: 12.270

4.  A catalytic coiled coil: structural insights into the activation of the Rab GTPase Sec4p by Sec2p.

Authors:  Gang Dong; Martina Medkova; Peter Novick; Karin M Reinisch
Journal:  Mol Cell       Date:  2007-02-09       Impact factor: 17.970

5.  Casein kinase I-like protein kinases encoded by YCK1 and YCK2 are required for yeast morphogenesis.

Authors:  L C Robinson; M M Menold; S Garrett; M R Culbertson
Journal:  Mol Cell Biol       Date:  1993-05       Impact factor: 4.272

6.  Sequential interactions with Sec23 control the direction of vesicle traffic.

Authors:  Christopher Lord; Deepali Bhandari; Shekar Menon; Majid Ghassemian; Deborah Nycz; Jesse Hay; Pradipta Ghosh; Susan Ferro-Novick
Journal:  Nature       Date:  2011-05-01       Impact factor: 49.962

7.  Ypt32 recruits the Sec4p guanine nucleotide exchange factor, Sec2p, to secretory vesicles; evidence for a Rab cascade in yeast.

Authors:  Darinel Ortiz; Martina Medkova; Christiane Walch-Solimena; Peter Novick
Journal:  J Cell Biol       Date:  2002-06-03       Impact factor: 10.539

8.  Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment.

Authors:  G Jedd; J Mulholland; N Segev
Journal:  J Cell Biol       Date:  1997-05-05       Impact factor: 10.539

9.  The role of Myo2, a yeast class V myosin, in vesicular transport.

Authors:  B Govindan; R Bowser; P Novick
Journal:  J Cell Biol       Date:  1995-03       Impact factor: 10.539

10.  The casein kinases Yck1p and Yck2p act in the secretory pathway, in part, by regulating the Rab exchange factor Sec2p.

Authors:  Danièle Stalder; Peter J Novick
Journal:  Mol Biol Cell       Date:  2015-12-23       Impact factor: 4.138

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  33 in total

1.  Phosphatidylinositol 4,5-bisphosphate controls Rab7 and PLEKHM1 membrane cycling during autophagosome-lysosome fusion.

Authors:  Takashi Baba; Daniel J Toth; Nivedita Sengupta; Yeun Ju Kim; Tamas Balla
Journal:  EMBO J       Date:  2019-03-13       Impact factor: 11.598

2.  Rab8a localisation and activation by Toll-like receptors on macrophage macropinosomes.

Authors:  Adam A Wall; Nicholas D Condon; Lin Luo; Jennifer L Stow
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-02-04       Impact factor: 6.237

Review 3.  Role of Rab GTPases in the export trafficking of G protein-coupled receptors.

Authors:  Guansong Wang; Zhe Wei; Guangyu Wu
Journal:  Small GTPases       Date:  2017-01-27

Review 4.  Polarized Exocytosis.

Authors:  Jingwen Zeng; Shanshan Feng; Bin Wu; Wei Guo
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-12-01       Impact factor: 10.005

5.  A Rab GTPase protein FvSec4 is necessary for fumonisin B1 biosynthesis and virulence in Fusarium verticillioides.

Authors:  Huijuan Yan; Jun Huang; Huan Zhang; Won Bo Shim
Journal:  Curr Genet       Date:  2019-07-11       Impact factor: 3.886

Review 6.  Consequences of Rab GTPase dysfunction in genetic or acquired human diseases.

Authors:  Marcellus J Banworth; Guangpu Li
Journal:  Small GTPases       Date:  2017-12-28

7.  Screening Legionella effectors for antiviral effects reveals Rab1 GTPase as a proviral factor coopted for tombusvirus replication.

Authors:  Jun-Ichi Inaba; Kai Xu; Nikolay Kovalev; Harish Ramanathan; Craig R Roy; Brett D Lindenbach; Peter D Nagy
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

8.  Capping protein regulates endosomal trafficking by controlling F-actin density around endocytic vesicles and recruiting RAB5 effectors.

Authors:  Dawei Wang; Zuodong Ye; Wenjie Wei; Jingting Yu; Lihong Huang; Hongmin Zhang; Jianbo Yue
Journal:  Elife       Date:  2021-11-19       Impact factor: 8.140

9.  Use of Immunohistochemistry to Determine Expression of Rab5 Subfamily of GTPases in Mature and Developmental Brains.

Authors:  Kwok-Ling Kam; Paige Parrack; Marcellus Banworth; Sheeja Aravindan; Guangpu Li; Kar-Ming Fung
Journal:  Methods Mol Biol       Date:  2021

Review 10.  Insane in the apical membrane: Trafficking events mediating apicobasal epithelial polarity during tube morphogenesis.

Authors:  Cayla E Jewett; Rytis Prekeris
Journal:  Traffic       Date:  2018-05-16       Impact factor: 6.215

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