Literature DB >> 27425443

Picosecond to nanosecond dynamics provide a source of conformational entropy for protein folding.

Andreas M Stadler1, Franz Demmel2, Jacques Ollivier3, Tilo Seydel3.   

Abstract

Myoglobin can be trapped in fully folded structures, partially folded molten globules, and unfolded states under stable equilibrium conditions. Here, we report an experimental study on the conformational dynamics of different folded conformational states of apo- and holomyoglobin in solution. Global protein diffusion and internal molecular motions were probed by neutron time-of-flight and neutron backscattering spectroscopy on the picosecond and nanosecond time scales. Global protein diffusion was found to depend on the α-helical content of the protein suggesting that charges on the macromolecule increase the short-time diffusion of protein. With regard to the molten globules, a gel-like phase due to protein entanglement and interactions with neighbouring macromolecules was visible due to a reduction of the global diffusion coefficients on the nanosecond time scale. Diffusion coefficients, residence and relaxation times of internal protein dynamics and root mean square displacements of localised internal motions were determined for the investigated structural states. The difference in conformational entropy ΔSconf of the protein between the unfolded and the partially or fully folded conformations was extracted from the measured root mean square displacements. Using thermodynamic parameters from the literature and the experimentally determined ΔSconf values we could identify the entropic contribution of the hydration shell ΔShydr of the different folded states. Our results point out the relevance of conformational entropy of the protein and the hydration shell for stability and folding of myoglobin.

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Year:  2016        PMID: 27425443     DOI: 10.1039/c6cp04146a

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  5 in total

1.  Determination of Dynamical Heterogeneity from Dynamic Neutron Scattering of Proteins.

Authors:  Derya Vural; Jeremy C Smith; Henry R Glyde
Journal:  Biophys J       Date:  2018-03-24       Impact factor: 4.033

2.  Nanosecond structural dynamics of intrinsically disordered β-casein micelles by neutron spectroscopy.

Authors:  Hiroshi Nakagawa; Marie-Sousai Appavou; Joachim Wuttke; Michaela Zamponi; Olaf Holderer; Tobias E Schrader; Dieter Richter; Wolfgang Doster
Journal:  Biophys J       Date:  2021-10-28       Impact factor: 4.033

3.  A New Look into the Mode of Action of Metal-Based Anticancer Drugs.

Authors:  M Paula M Marques; Ana L M Batista de Carvalho; Adriana P Mamede; Asha Dopplapudi; Svemir Rudić; Madhusudan Tyagi; Victoria Garcia Sakai; Luís A E Batista de Carvalho
Journal:  Molecules       Date:  2020-01-07       Impact factor: 4.411

4.  Transition between protein-like and polymer-like dynamic behavior: Internal friction in unfolded apomyoglobin depends on denaturing conditions.

Authors:  Livia Balacescu; Tobias E Schrader; Aurel Radulescu; Piotr Zolnierczuk; Olaf Holderer; Stefano Pasini; Jörg Fitter; Andreas M Stadler
Journal:  Sci Rep       Date:  2020-01-31       Impact factor: 4.379

5.  Molecular Dynamics of Lysozyme Amyloid Polymorphs Studied by Incoherent Neutron Scattering.

Authors:  Tatsuhito Matsuo; Alessio De Francesco; Judith Peters
Journal:  Front Mol Biosci       Date:  2022-01-17
  5 in total

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