Literature DB >> 27424222

Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells.

Anton M Schwartz1, Lidia V Putlyaeva1, Milica Covich1, Anna V Klepikova2, Kseniya A Akulich3, Ilya E Vorontsov4, Kirill V Korneev5, Sergey E Dmitriev6, Oleg L Polanovsky1, Svetlana P Sidorenko7, Ivan V Kulakovskiy8, Dmitry V Kuprash9.   

Abstract

Signaling lymphocytic activation molecule family member 1 (SLAMF1)/CD150 is a co-stimulatory receptor expressed on a variety of hematopoietic cells, in particular on mature lymphocytes activated by specific antigen, costimulation and cytokines. Changes in CD150 expression level have been reported in association with autoimmunity and with B-cell chronic lymphocytic leukemia. We characterized the core promoter for SLAMF1 gene in human B-cell lines and explored binding sites for a number of transcription factors involved in B cell differentiation and activation. Mutations of SP1, STAT6, IRF4, NF-kB, ELF1, TCF3, and SPI1/PU.1 sites resulted in significantly decreased promoter activity of varying magnitude, depending on the cell line tested. The most profound effect on the promoter strength was observed upon mutation of the binding site for Early B-cell factor 1 (EBF1). This mutation produced a 10-20 fold drop in promoter activity and pinpointed EBF1 as the master regulator of human SLAMF1 gene in B cells. We also identified three potent transcriptional enhancers in human SLAMF1 locus, each containing functional EBF1 binding sites. Thus, EBF1 interacts with specific binding sites located both in the promoter and in the enhancer regions of the SLAMF1 gene and is critical for its expression in human B cells.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  B cell; EBF1; RNA isoform; SLAMF; Transcriptional regulation; Trascription factor

Mesh:

Substances:

Year:  2016        PMID: 27424222     DOI: 10.1016/j.bbagrm.2016.07.004

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  8 in total

1.  HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Authors:  Ivan V Kulakovskiy; Ilya E Vorontsov; Ivan S Yevshin; Ruslan N Sharipov; Alla D Fedorova; Eugene I Rumynskiy; Yulia A Medvedeva; Arturo Magana-Mora; Vladimir B Bajic; Dmitry A Papatsenko; Fedor A Kolpakov; Vsevolod J Makeev
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

2.  Crohn's Disease Is Associated With Activation of Circulating Innate Lymphoid Cells.

Authors:  Luca Mazzurana; Ferdinando Bonfiglio; Marianne Forkel; Mauro D'Amato; Jonas Halfvarson; Jenny Mjösberg
Journal:  Inflamm Bowel Dis       Date:  2021-06-15       Impact factor: 5.325

3.  The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region.

Authors:  Marina A Afanasyeva; Lidia V Putlyaeva; Denis E Demin; Ivan V Kulakovskiy; Ilya E Vorontsov; Marina V Fridman; Vsevolod J Makeev; Dmitry V Kuprash; Anton M Schwartz
Journal:  PLoS One       Date:  2017-02-24       Impact factor: 3.240

4.  MNase Profiling of Promoter Chromatin in Salmonella typhimurium-Stimulated GM12878 Cells Reveals Dynamic and Response-Specific Nucleosome Architecture.

Authors:  Lauren Cole; Jonathan Dennis
Journal:  G3 (Bethesda)       Date:  2020-07-07       Impact factor: 3.154

5.  Functional SNPs in the Human Autoimmunity-Associated Locus 17q12-21.

Authors:  Alina S Ustiugova; Kirill V Korneev; Dmitry V Kuprash; And Marina A Afanasyeva
Journal:  Genes (Basel)       Date:  2019-01-23       Impact factor: 4.096

6.  Early B-cell factors involve in the tumorigenesis and predict the overall survival of gastric cancer.

Authors:  Qing Wang; Jiahong Liang; Xianyu Hu; Songgang Gu; Qiaodong Xu; Jiang Yan
Journal:  Biosci Rep       Date:  2021-07-30       Impact factor: 3.840

7.  The Minor Variant of the Single-Nucleotide Polymorphism rs3753381 Affects the Activity of a SLAMF1 Enhancer.

Authors:  L V Putlyaeva; A M Schwartz; A V Klepikova; I E Vorontsov; I V Kulakovskiy; D V Kuprash
Journal:  Acta Naturae       Date:  2017 Jul-Sep       Impact factor: 1.845

Review 8.  Histamine in cancer immunology and immunotherapy. Current status and new perspectives.

Authors:  María de la Paz Sarasola; Mónica A Táquez Delgado; Melisa B Nicoud; Vanina A Medina
Journal:  Pharmacol Res Perspect       Date:  2021-10
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.