Literature DB >> 27422841

Comparative Analysis of Microbial Communities in Iron-Dominated Flocculent Mats in Deep-Sea Hydrothermal Environments.

Hiroko Makita1, Sakiko Kikuchi2, Satoshi Mitsunobu3, Yoshihiro Takaki2, Toshiro Yamanaka4, Tomohiro Toki5, Takuroh Noguchi6, Kentaro Nakamura7, Mariko Abe2, Miho Hirai2, Masahiro Yamamoto2, Katsuyuki Uematsu8, Junichi Miyazaki2, Takuro Nunoura2, Yoshio Takahashi9, Ken Takai2.   

Abstract

UNLABELLED: It has been suggested that iron is one of the most important energy sources for photosynthesis-independent microbial ecosystems in the ocean crust. Iron-metabolizing chemolithoautotrophs play a key role as primary producers, but little is known about their distribution and diversity and their ecological role as submarine iron-metabolizing chemolithotrophs, particularly the iron oxidizers. In this study, we investigated the microbial communities in several iron-dominated flocculent mats found in deep-sea hydrothermal fields in the Mariana Volcanic Arc and Trough and the Okinawa Trough by culture-independent molecular techniques and X-ray mineralogical analyses. The abundance and composition of the 16S rRNA gene phylotypes demonstrated the ubiquity of zetaproteobacterial phylotypes in iron-dominated mat communities affected by hydrothermal fluid input. Electron microscopy with energy-dispersive X-ray microanalysis and X-ray absorption fine structure (XAFS) analysis revealed the chemical and mineralogical signatures of biogenic Fe-(oxy)hydroxide species and the potential contribution of Zetaproteobacteria to the in situ generation. These results suggest that putative iron-oxidizing chemolithoautotrophs play a significant ecological role in producing iron-dominated flocculent mats and that they are important for iron and carbon cycles in deep-sea low-temperature hydrothermal environments. IMPORTANCE: We report novel aspects of microbiology from iron-dominated flocculent mats in various deep-sea environments. In this study, we examined the relationship between Zetaproteobacteria and iron oxides across several hydrothermally influenced sites in the deep sea. We analyzed iron-dominated mats using culture-independent molecular techniques and X-ray mineralogical analyses. The scanning electron microscopy-energy-dispersive X-ray spectroscopy SEM-EDS analysis and X-ray absorption fine structure (XAFS) analysis revealed chemical and mineralogical signatures of biogenic Fe-(oxy)hydroxide species as well as the potential contribution of the zetaproteobacterial population to the in situ production. These key findings provide important information for understanding the mechanisms of both geomicrobiological iron cycling and the formation of iron-dominated mats in deep-sea hydrothermal fields.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID: 27422841      PMCID: PMC5038026          DOI: 10.1128/AEM.01151-16

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  53 in total

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Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

2.  Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough.

Authors:  Shingo Kato; Chiyori Kobayashi; Takeshi Kakegawa; Akihiko Yamagishi
Journal:  Environ Microbiol       Date:  2009-04-22       Impact factor: 5.491

3.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

4.  Neutrophilic Fe-oxidizing bacteria are abundant at the Loihi Seamount hydrothermal vents and play a major role in Fe oxide deposition.

Authors:  David Emerson; Craig L Moyer
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

Review 5.  Biology of iron- and manganese-depositing bacteria.

Authors:  W C Ghiorse
Journal:  Annu Rev Microbiol       Date:  1984       Impact factor: 15.500

6.  Nanometer-scale visualization and structural analysis of the inorganic/organic hybrid structure of Gallionella ferruginea twisted stalks.

Authors:  Tomoko Suzuki; Hideki Hashimoto; Nobuyuki Matsumoto; Mitsuaki Furutani; Hitoshi Kunoh; Jun Takada
Journal:  Appl Environ Microbiol       Date:  2011-03-04       Impact factor: 4.792

7.  Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation.

Authors:  Clara S Chan; Sirine C Fakra; David Emerson; Emily J Fleming; Katrina J Edwards
Journal:  ISME J       Date:  2010-11-25       Impact factor: 10.302

8.  Vailulu'u Seamount, Samoa: Life and death on an active submarine volcano.

Authors:  Hubert Staudigel; Stanley R Hart; Adele Pile; Bradley E Bailey; Edward T Baker; Sandra Brooke; Douglas P Connelly; Lisa Haucke; Christopher R German; Ian Hudson; Daniel Jones; Anthony A P Koppers; Jasper Konter; Ray Lee; Theodore W Pietsch; Bradley M Tebo; Alexis S Templeton; Robert Zierenberg; Craig M Young
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-13       Impact factor: 11.205

9.  Leaching of pyrite by acidophilic heterotrophic iron-oxidizing bacteria in pure and mixed cultures.

Authors:  P Bacelar-Nicolau; D B Johnson
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

10.  Ultra-diffuse hydrothermal venting supports Fe-oxidizing bacteria and massive umber deposition at 5000 m off Hawaii.

Authors:  Katrina J Edwards; B T Glazer; O J Rouxel; W Bach; D Emerson; R E Davis; B M Toner; C S Chan; B M Tebo; H Staudigel; C L Moyer
Journal:  ISME J       Date:  2011-05-05       Impact factor: 10.302

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  8 in total

1.  Genomic Insights into Two Novel Fe(II)-Oxidizing Zetaproteobacteria Isolates Reveal Lifestyle Adaption to Coastal Marine Sediments.

Authors:  Nia Blackwell; Casey Bryce; Daniel Straub; Andreas Kappler; Sara Kleindienst
Journal:  Appl Environ Microbiol       Date:  2020-08-18       Impact factor: 4.792

Review 2.  Iron-oxidizing bacteria in marine environments: recent progresses and future directions.

Authors:  Hiroko Makita
Journal:  World J Microbiol Biotechnol       Date:  2018-07-04       Impact factor: 3.312

3.  Aerobic and anaerobic iron oxidizers together drive denitrification and carbon cycling at marine iron-rich hydrothermal vents.

Authors:  Sean M McAllister; Rebecca Vandzura; Jessica L Keffer; Shawn W Polson; Clara S Chan
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Review 4.  The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives.

Authors:  Sean M McAllister; Ryan M Moore; Amy Gartman; George W Luther; David Emerson; Clara S Chan
Journal:  FEMS Microbiol Ecol       Date:  2019-04-01       Impact factor: 4.194

5.  Validating the Cyc2 Neutrophilic Iron Oxidation Pathway Using Meta-omics of Zetaproteobacteria Iron Mats at Marine Hydrothermal Vents.

Authors:  Sean M McAllister; Shawn W Polson; David A Butterfield; Brian T Glazer; Jason B Sylvan; Clara S Chan
Journal:  mSystems       Date:  2020-02-18       Impact factor: 6.496

6.  Fine-Scale Biogeography and the Inference of Ecological Interactions Among Neutrophilic Iron-Oxidizing Zetaproteobacteria as Determined by a Rule-Based Microbial Network.

Authors:  Katherine Duchinski; Craig L Moyer; Kevin Hager; Heather Fullerton
Journal:  Front Microbiol       Date:  2019-10-25       Impact factor: 5.640

7.  Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc.

Authors:  Kevin W Hager; Heather Fullerton; David A Butterfield; Craig L Moyer
Journal:  Front Microbiol       Date:  2017-08-28       Impact factor: 5.640

8.  Microbiomes in a manganese oxide producing ecosystem in the Ytterby mine, Sweden: impact on metal mobility.

Authors:  Susanne Sjöberg; Courtney W Stairs; Bert Allard; Felix Homa; Tom Martin; Viktor Sjöberg; Thijs J G Ettema; Christophe Dupraz
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  8 in total

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